Analysis of interatomic Contacts of Structural Units in PDB entry:
9MMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MMV entry

There are 4 chains in PDB entry 9MMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLN 1PRO 214
L
 ASP 1VAL 206
M
 GLU 1LYS 224
N
 ASP 1ARG 211
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9MMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
28 32Right-handed 310
Helix 2
AA2
H
62 65Right-handed 310
Helix 3
AA3
H
87 91Right-handed 310
Helix 4
AA4
H
188 190Right-handed 310
Helix 5
AA5
L
77 81Right-handed 310
Helix 6
AA6
L
121 127Right-handed alpha
Helix 7
AA7
M
53 57Right-handed 310
Helix 8
AA8
M
89 93Right-handed 310
Helix 9
AA9
M
196 200Right-handed alpha
Helix 10
AB1
N
121 126Right-handed alpha
Helix 11
AB2
N
183 189Right-handed alpha
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There are 21 sheets in PDB entry 9MMV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
17 25anti-parallel
Strand 3
H
78 84anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
108 112parallel
Strand 3
H
92 98anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
121 125first strand
Strand 2
H
136 146anti-parallel
Strand 3
H
177 186anti-parallel
Strand 4
H
164 166anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
121 125first strand
Strand 2
H
136 146anti-parallel
Strand 3
H
177 186anti-parallel
Strand 4
H
170 171anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
151 155first strand
Strand 2
H
195 201anti-parallel
Strand 3
H
206 212anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
101 105parallel
Strand 3
L
83 89anti-parallel
Strand 4
L
32 36anti-parallel
Strand 5
L
43 46anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 12first strand
Strand 2
L
101 105parallel
Strand 3
L
83 89anti-parallel
Strand 4
L
95 97anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
18 21first strand
Strand 2
L
68 73anti-parallel
Strand 3
L
60 65anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 116first strand
Strand 2
L
130 139anti-parallel
Strand 3
L
172 180anti-parallel
Strand 4
L
160 161anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
114 116first strand
Strand 2
L
130 139anti-parallel
Strand 3
L
172 180anti-parallel
Strand 4
L
165 166anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
145 149first strand
Strand 2
L
191 196anti-parallel
Strand 3
L
201 206anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
3 7first strand
Strand 2
M
18 25anti-parallel
Strand 3
M
80 85anti-parallel
Strand 4
M
70 75anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
11 12first strand
Strand 2
M
121 125parallel
Strand 3
M
94 103anti-parallel
Strand 4
M
33 39anti-parallel
Strand 5
M
45 51anti-parallel
Strand 6
M
61 62anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
11 12first strand
Strand 2
M
121 125parallel
Strand 3
M
94 103anti-parallel
Strand 4
M
111 117anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
134 138first strand
Strand 2
M
145 155anti-parallel
Strand 3
M
186 195anti-parallel
Strand 4
M
173 175anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
134 138first strand
Strand 2
M
145 155anti-parallel
Strand 3
M
186 195anti-parallel
Strand 4
M
179 180anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
160 164first strand
Strand 2
M
205 210anti-parallel
Strand 3
M
215 220anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
4 7first strand
Strand 2
N
19 25anti-parallel
Strand 3
N
70 75anti-parallel
Strand 4
N
62 65anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
10 13first strand
Strand 2
N
102 106parallel
Strand 3
N
85 90anti-parallel
Strand 4
N
33 38anti-parallel
Strand 5
N
45 49anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
114 118first strand
Strand 2
N
129 137anti-parallel
Strand 3
N
174 182anti-parallel
Strand 4
N
159 164anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
N
153 155first strand
Strand 2
N
145 150anti-parallel
Strand 3
N
191 197anti-parallel
Strand 4
N
205 210anti-parallel
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