Analysis of interatomic Contacts of Structural Units in PDB entry:
9MMX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MMX entry

There are 6 chains in PDB entry 9MMX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 322ILE 443
B
 CYS 325ILE 443
C
 THR 78ALA 151
D
 THR 79GLU 157
E
 GLY 70GLU 150
F
 SER 73ARG 156
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 9MMX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
337 342Right-handed alpha
Helix 2
AA2
A
343 345Right-handed 310
Helix 3
AA3
A
422 426Right-handed 310
Helix 4
AA4
B
337 342Right-handed alpha
Helix 5
AA5
B
343 345Right-handed 310
Helix 6
AA6
C
79 151Right-handed alpha
Helix 7
AA7
D
80 154Right-handed alpha
Helix 8
AA8
E
72 149Right-handed alpha
Helix 9
AA9
F
74 155Right-handed alpha
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There are 6 sheets in PDB entry 9MMX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 335first strand
Strand 2
A
352 357anti-parallel
Strand 3
A
369 375anti-parallel
Strand 4
A
378 380anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
386 390anti-parallel
Strand 3
A
405 407anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 413first strand
Strand 2
A
428 432anti-parallel
Strand 3
A
435 437anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 335first strand
Strand 2
B
352 357anti-parallel
Strand 3
B
369 373anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
361 362first strand
Strand 2
B
386 390anti-parallel
Strand 3
B
405 407anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
411 413first strand
Strand 2
B
428 432anti-parallel
Strand 3
B
435 437anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il