Analysis of interatomic Contacts of Structural Units in PDB entry:
9MN4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MN4 entry

There are 6 chains in PDB entry 9MN4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 43THR 234
B
 LYS 72ASP 395
E
 TRP 122SER 1230
N
 T 1 C 50
R
 G 1 G 3
T
 G 1 A 50
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 9MN4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 72Right-handed alpha
Helix 2
AA2
A
76 91Right-handed alpha
Helix 3
AA3
A
92 121Right-handed alpha
Helix 4
AA4
A
122 152Right-handed alpha
Helix 5
AA5
A
160 170Right-handed alpha
Helix 6
AA6
A
177 192Right-handed alpha
Helix 7
AA7
A
193 225Right-handed alpha
Helix 8
AA8
B
77 90Right-handed alpha
Helix 9
AA9
B
107 116Right-handed alpha
Helix 10
AB1
B
129 136Right-handed alpha
Helix 11
AB2
B
168 175Right-handed alpha
Helix 12
AB3
B
199 214Right-handed alpha
Helix 13
AB4
B
215 220Right-handed 310
Helix 14
AB5
B
230 238Right-handed alpha
Helix 15
AB6
B
248 257Right-handed alpha
Helix 16
AB7
B
282 291Right-handed alpha
Helix 17
AB8
B
316 328Right-handed alpha
Helix 18
AB9
B
334 343Right-handed alpha
Helix 19
AC1
B
346 355Right-handed alpha
Helix 20
AC2
B
361 365Right-handed 310
Helix 21
AC3
B
366 379Right-handed alpha
Helix 22
AC4
B
390 394Right-handed 310
Helix 23
AC5
E
123 146Right-handed alpha
Helix 24
AC6
E
150 157Right-handed alpha
Helix 25
AC7
E
168 181Right-handed alpha
Helix 26
AC8
E
186 197Right-handed alpha
Helix 27
AC9
E
220 236Right-handed alpha
Helix 28
AD1
E
238 252Right-handed alpha
Helix 29
AD2
E
252 257Right-handed alpha
Helix 30
AD3
E
260 273Right-handed alpha
Helix 31
AD4
E
276 290Right-handed alpha
Helix 32
AD5
E
295 308Right-handed alpha
Helix 33
AD6
E
319 327Right-handed alpha
Helix 34
AD7
E
330 335Right-handed alpha
Helix 35
AD8
E
340 352Right-handed alpha
Helix 36
AD9
E
392 410Right-handed alpha
Helix 37
AE1
E
424 432Right-handed alpha
Helix 38
AE2
E
438 462Right-handed alpha
Helix 39
AE3
E
467 473Right-handed alpha
Helix 40
AE4
E
475 488Right-handed alpha
Helix 41
AE5
E
497 520Right-handed alpha
Helix 42
AE6
E
521 534Right-handed alpha
Helix 43
AE7
E
548 556Right-handed alpha
Helix 44
AE8
E
568 587Right-handed alpha
Helix 45
AE9
E
624 632Right-handed alpha
Helix 46
AF1
E
678 687Right-handed alpha
Helix 47
AF2
E
689 691Right-handed 310
Helix 48
AF3
E
692 704Right-handed alpha
Helix 49
AF4
E
710 723Right-handed alpha
Helix 50
AF5
E
727 731Right-handed 310
Helix 51
AF6
E
764 789Right-handed alpha
Helix 52
AF7
E
820 823Right-handed 310
Helix 53
AF8
E
836 850Right-handed alpha
Helix 54
AF9
E
856 867Right-handed alpha
Helix 55
AG1
E
867 876Right-handed alpha
Helix 56
AG2
E
883 888Right-handed 310
Helix 57
AG3
E
890 906Right-handed alpha
Helix 58
AG4
E
909 912Right-handed 310
Helix 59
AG5
E
925 936Right-handed alpha
Helix 60
AG6
E
939 944Right-handed alpha
Helix 61
AG7
E
954 972Right-handed alpha
Helix 62
AG8
E
976 981Right-handed alpha
Helix 63
AG9
E
990 997Right-handed alpha
Helix 64
AH1
E
1002 1017Right-handed alpha
Helix 65
AH2
E
1021 1023Right-handed 310
Helix 66
AH3
E
1024 1044Right-handed alpha
Helix 67
AH4
E
1045 1063Right-handed alpha
Helix 68
AH5
E
1118 1142Right-handed alpha
Helix 69
AH6
E
1156 1158Right-handed 310
Helix 70
AH7
E
1159 1177Right-handed alpha
Helix 71
AH8
E
1178 1190Right-handed alpha
Helix 72
AH9
E
1197 1210Right-handed alpha
Helix 73
AI1
E
1218 1225Right-handed 310
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There are 11 sheets in PDB entry 9MN4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 75first strand
Strand 2
B
271 273anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 101first strand
Strand 2
B
191 194parallel
Strand 3
B
227 229parallel
Strand 4
B
296 303anti-parallel
Strand 5
B
258 266anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
412 413first strand
Strand 2
E
640 641anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
495 496first strand
Strand 2
E
616 623anti-parallel
Strand 3
E
606 613anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
588 590first strand
Strand 2
E
602 604anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
707 709first strand
Strand 2
E
825 827anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
798 800first strand
Strand 2
E
806 808anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
831 832first strand
Strand 2
E
914 915anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
919 922first strand
Strand 2
E
1152 1155anti-parallel
Strand 3
E
1147 1149anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1070 1071first strand
Strand 2
E
1077 1078anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1089 1091first strand
Strand 2
E
1098 1100anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il