Analysis of interatomic Contacts of Structural Units in PDB entry:
9MN8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MN8 entry

There are 4 chains in PDB entry 9MN8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 GLN 218SER 1230
N
 A 43 A 52
T
 T -1 T 15
R
 G 1 G 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 9MN8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
220 236Right-handed alpha
Helix 2
AA2
E
238 252Right-handed alpha
Helix 3
AA3
E
252 257Right-handed alpha
Helix 4
AA4
E
260 275Right-handed alpha
Helix 5
AA5
E
276 289Right-handed alpha
Helix 6
AA6
E
295 309Right-handed alpha
Helix 7
AA7
E
311 316Right-handed alpha
Helix 8
AA8
E
318 327Right-handed alpha
Helix 9
AA9
E
329 336Right-handed alpha
Helix 10
AB1
E
340 354Right-handed alpha
Helix 11
AB2
E
392 409Right-handed alpha
Helix 12
AB3
E
424 462Right-handed alpha
Helix 13
AB4
E
467 472Right-handed alpha
Helix 14
AB5
E
475 490Right-handed alpha
Helix 15
AB6
E
496 520Right-handed alpha
Helix 16
AB7
E
521 538Right-handed alpha
Helix 17
AB8
E
548 556Right-handed alpha
Helix 18
AB9
E
568 585Right-handed alpha
Helix 19
AC1
E
624 633Right-handed alpha
Helix 20
AC2
E
678 685Right-handed alpha
Helix 21
AC3
E
692 704Right-handed alpha
Helix 22
AC4
E
710 723Right-handed alpha
Helix 23
AC5
E
758 789Right-handed alpha
Helix 24
AC6
E
818 824Right-handed alpha
Helix 25
AC7
E
836 850Right-handed alpha
Helix 26
AC8
E
856 867Right-handed alpha
Helix 27
AC9
E
867 877Right-handed alpha
Helix 28
AD1
E
883 888Right-handed 310
Helix 29
AD2
E
890 906Right-handed alpha
Helix 30
AD3
E
925 936Right-handed alpha
Helix 31
AD4
E
937 944Right-handed alpha
Helix 32
AD5
E
954 972Right-handed alpha
Helix 33
AD6
E
975 980Right-handed alpha
Helix 34
AD7
E
986 997Right-handed alpha
Helix 35
AD8
E
1002 1016Right-handed alpha
Helix 36
AD9
E
1024 1034Right-handed alpha
Helix 37
AE1
E
1036 1040Right-handed 310
Helix 38
AE2
E
1044 1065Right-handed alpha
Helix 39
AE3
E
1111 1141Right-handed alpha
Helix 40
AE4
E
1159 1177Right-handed alpha
Helix 41
AE5
E
1178 1191Right-handed alpha
Helix 42
AE6
E
1197 1210Right-handed alpha
Helix 43
AE7
E
1218 1225Right-handed 310
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There are 7 sheets in PDB entry 9MN8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
411 415first strand
Strand 2
E
638 642anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
588 590first strand
Strand 2
E
602 604anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
794 795first strand
Strand 2
E
706 709anti-parallel
Strand 3
E
825 827anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
798 800first strand
Strand 2
E
806 808anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
831 832first strand
Strand 2
E
914 915anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1146 1149first strand
Strand 2
E
1152 1155anti-parallel
Strand 3
E
919 923anti-parallel
Strand 4
E
1229 1230anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1069 1071first strand
Strand 2
E
1077 1079anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il