Analysis of interatomic Contacts of Structural Units in PDB entry:
9MNA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MNA entry

There are 6 chains in PDB entry 9MNA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 149ASP 357
B
 LEU 151VAL 355
E
 SER 220SER 1230
N
 A 28 G 57
T
 C -5 T 24
R
 G 1 G 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 9MNA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
149 155Right-handed alpha
Helix 2
AA2
A
160 166Right-handed alpha
Helix 3
AA3
A
208 221Right-handed alpha
Helix 4
AA4
A
243 260Right-handed alpha
Helix 5
AA5
A
264 269Right-handed alpha
Helix 6
AA6
A
278 285Right-handed alpha
Helix 7
AA7
A
296 305Right-handed alpha
Helix 8
AA8
A
321 335Right-handed alpha
Helix 9
AA9
A
338 354Right-handed alpha
Helix 10
AB1
B
160 166Right-handed alpha
Helix 11
AB2
B
208 222Right-handed alpha
Helix 12
AB3
B
243 261Right-handed alpha
Helix 13
AB4
B
278 286Right-handed alpha
Helix 14
AB5
B
296 304Right-handed alpha
Helix 15
AB6
B
318 332Right-handed alpha
Helix 16
AB7
B
337 341Right-handed 310
Helix 17
AB8
B
342 355Right-handed alpha
Helix 18
AB9
E
221 236Right-handed alpha
Helix 19
AC1
E
238 252Right-handed alpha
Helix 20
AC2
E
252 257Right-handed alpha
Helix 21
AC3
E
263 274Right-handed alpha
Helix 22
AC4
E
278 291Right-handed alpha
Helix 23
AC5
E
295 307Right-handed alpha
Helix 24
AC6
E
315 325Right-handed alpha
Helix 25
AC7
E
326 328Right-handed 310
Helix 26
AC8
E
332 337Right-handed alpha
Helix 27
AC9
E
340 355Right-handed alpha
Helix 28
AD1
E
392 409Right-handed alpha
Helix 29
AD2
E
424 462Right-handed alpha
Helix 30
AD3
E
467 472Right-handed alpha
Helix 31
AD4
E
475 489Right-handed alpha
Helix 32
AD5
E
496 521Right-handed alpha
Helix 33
AD6
E
521 534Right-handed alpha
Helix 34
AD7
E
535 537Right-handed 310
Helix 35
AD8
E
548 555Right-handed alpha
Helix 36
AD9
E
568 587Right-handed alpha
Helix 37
AE1
E
624 634Right-handed alpha
Helix 38
AE2
E
678 687Right-handed alpha
Helix 39
AE3
E
692 704Right-handed alpha
Helix 40
AE4
E
711 723Right-handed alpha
Helix 41
AE5
E
726 730Right-handed 310
Helix 42
AE6
E
751 789Right-handed alpha
Helix 43
AE7
E
818 824Right-handed alpha
Helix 44
AE8
E
837 850Right-handed alpha
Helix 45
AE9
E
856 867Right-handed alpha
Helix 46
AF1
E
867 877Right-handed alpha
Helix 47
AF2
E
890 906Right-handed alpha
Helix 48
AF3
E
925 934Right-handed alpha
Helix 49
AF4
E
954 974Right-handed alpha
Helix 50
AF5
E
975 982Right-handed alpha
Helix 51
AF6
E
986 998Right-handed alpha
Helix 52
AF7
E
1002 1017Right-handed alpha
Helix 53
AF8
E
1025 1033Right-handed alpha
Helix 54
AF9
E
1035 1044Right-handed alpha
Helix 55
AG1
E
1046 1065Right-handed alpha
Helix 56
AG2
E
1112 1117Right-handed alpha
Helix 57
AG3
E
1119 1141Right-handed alpha
Helix 58
AG4
E
1159 1177Right-handed alpha
Helix 59
AG5
E
1178 1192Right-handed alpha
Helix 60
AG6
E
1197 1209Right-handed alpha
Helix 61
AG7
E
1218 1225Right-handed 310
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There are 11 sheets in PDB entry 9MNA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 197first strand
Strand 2
A
180 185anti-parallel
Strand 3
A
170 174anti-parallel
Strand 4
A
228 233parallel
Strand 5
A
273 277parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 289first strand
Strand 2
A
292 293anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 196first strand
Strand 2
B
180 185anti-parallel
Strand 3
B
170 175anti-parallel
Strand 4
B
228 233parallel
Strand 5
B
273 277parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
412 415first strand
Strand 2
E
638 641anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
588 590first strand
Strand 2
E
602 604anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
606 609first strand
Strand 2
E
620 623anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
707 709first strand
Strand 2
E
825 827anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
798 800first strand
Strand 2
E
806 808anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
831 832first strand
Strand 2
E
914 915anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
919 922first strand
Strand 2
E
1152 1155anti-parallel
Strand 3
E
1147 1149anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1069 1071first strand
Strand 2
E
1077 1079anti-parallel
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