Analysis of interatomic Contacts of Structural Units in PDB entry:
9MND


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MND entry

There are 2 chains in PDB entry 9MND (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 PRO 371ALA 891
A
 VAL 405ASP 890
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 9MND. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
379 390Right-handed alpha
Helix 2
AA2
C
392 399Right-handed alpha
Helix 3
AA3
C
402 432Right-handed alpha
Helix 4
AA4
C
436 455Right-handed alpha
Helix 5
AA5
C
465 483Right-handed alpha
Helix 6
AA6
C
485 507Right-handed alpha
Helix 7
AA7
C
508 516Right-handed 310
Helix 8
AA8
C
517 547Right-handed alpha
Helix 9
AA9
C
569 593Right-handed alpha
Helix 10
AB1
C
598 608Right-handed alpha
Helix 11
AB2
C
608 623Right-handed alpha
Helix 12
AB3
C
660 667Right-handed alpha
Helix 13
AB4
C
667 690Right-handed alpha
Helix 14
AB5
C
691 695Right-handed 310
Helix 15
AB6
C
701 718Right-handed alpha
Helix 16
AB7
C
727 738Right-handed alpha
Helix 17
AB8
C
760 772Right-handed alpha
Helix 18
AB9
C
773 775Right-handed 310
Helix 19
AC1
C
776 781Right-handed alpha
Helix 20
AC2
C
784 799Right-handed alpha
Helix 21
AC3
C
803 812Right-handed alpha
Helix 22
AC4
C
815 819Right-handed 310
Helix 23
AC5
C
822 827Right-handed alpha
Helix 24
AC6
C
829 853Right-handed alpha
Helix 25
AC7
C
855 857Right-handed 310
Helix 26
AC8
C
858 865Right-handed alpha
Helix 27
AC9
C
865 872Right-handed alpha
Helix 28
AD1
C
872 878Right-handed alpha
Helix 29
AD2
C
879 887Right-handed alpha
Helix 30
AD3
A
406 432Right-handed alpha
Helix 31
AD4
A
436 455Right-handed alpha
Helix 32
AD5
A
465 483Right-handed alpha
Helix 33
AD6
A
485 505Right-handed alpha
Helix 34
AD7
A
517 547Right-handed alpha
Helix 35
AD8
A
569 593Right-handed alpha
Helix 36
AD9
A
598 608Right-handed alpha
Helix 37
AE1
A
608 623Right-handed alpha
Helix 38
AE2
A
660 667Right-handed alpha
Helix 39
AE3
A
667 686Right-handed alpha
Helix 40
AE4
A
703 718Right-handed alpha
Helix 41
AE5
A
752 773Right-handed alpha
Helix 42
AE6
A
776 781Right-handed alpha
Helix 43
AE7
A
784 799Right-handed alpha
Helix 44
AE8
A
803 813Right-handed alpha
Helix 45
AE9
A
814 819Right-handed 310
Helix 46
AF1
A
822 827Right-handed alpha
Helix 47
AF2
A
829 853Right-handed alpha
Helix 48
AF3
A
854 857Right-handed 310
Helix 49
AF4
A
858 865Right-handed alpha
Helix 50
AF5
A
865 872Right-handed alpha
Helix 51
AF6
A
872 878Right-handed alpha
Helix 52
AF7
A
879 887Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9MND. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
462 463first strand
Strand 2
C
725 726anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
739 742first strand
Strand 2
C
752 756anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
461 463first strand
Strand 2
A
725 727anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il