Analysis of interatomic Contacts of Structural Units in PDB entry:
9MNH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MNH entry

There are 3 chains in PDB entry 9MNH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 22	LEU 482
B	VAL 22	LEU 482
C	VAL 22	LEU 482

There are 43 helices in PDB entry 9MNH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	31	Right-handed alpha
Helix 2	AA2	A	60	64	Right-handed 310
Helix 3	AA3	A	69	95	Right-handed alpha
Helix 4	AA4	A	110	115	Right-handed alpha
Helix 5	AA5	A	118	140	Right-handed alpha
Helix 6	AA6	A	141	146	Right-handed alpha
Helix 7	AA7	A	171	176	Right-handed alpha
Helix 8	AA8	A	185	208	Right-handed alpha
Helix 9	AA9	A	209	213	Right-handed 310
Helix 10	AB1	A	221	227	Right-handed alpha
Helix 11	AB2	A	228	230	Right-handed 310
Helix 12	AB3	A	232	241	Right-handed alpha
Helix 13	AB4	A	247	252	Right-handed alpha
Helix 14	AB5	A	343	352	Right-handed alpha
Helix 15	AB6	A	446	478	Right-handed alpha
Helix 16	AB7	B	23	31	Right-handed alpha
Helix 17	AB8	B	60	64	Right-handed 310
Helix 18	AB9	B	69	94	Right-handed alpha
Helix 19	AC1	B	118	140	Right-handed alpha
Helix 20	AC2	B	141	146	Right-handed alpha
Helix 21	AC3	B	185	208	Right-handed alpha
Helix 22	AC4	B	209	213	Right-handed 310
Helix 23	AC5	B	222	227	Right-handed alpha
Helix 24	AC6	B	232	241	Right-handed alpha
Helix 25	AC7	B	247	252	Right-handed alpha
Helix 26	AC8	B	343	352	Right-handed alpha
Helix 27	AC9	B	446	479	Right-handed alpha
Helix 28	AD1	C	23	31	Right-handed alpha
Helix 29	AD2	C	60	64	Right-handed 310
Helix 30	AD3	C	69	92	Right-handed alpha
Helix 31	AD4	C	111	115	Right-handed alpha
Helix 32	AD5	C	118	140	Right-handed alpha
Helix 33	AD6	C	141	146	Right-handed alpha
Helix 34	AD7	C	171	176	Right-handed alpha
Helix 35	AD8	C	185	208	Right-handed alpha
Helix 36	AD9	C	209	213	Right-handed 310
Helix 37	AE1	C	222	227	Right-handed alpha
Helix 38	AE2	C	232	241	Right-handed alpha
Helix 39	AE3	C	247	252	Right-handed alpha
Helix 40	AE4	C	343	352	Right-handed alpha
Helix 41	AE5	C	353	357	Right-handed 310
Helix 42	AE6	C	448	479	Right-handed alpha
Helix 43	AE7	C	480	482	Right-handed 310

There are 21 sheets in PDB entry 9MNH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	281	first strand
Strand 2	A	32	43	anti-parallel
Strand 3	A	331	334	parallel
Strand 4	A	326	327	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	281	first strand
Strand 2	A	32	43	anti-parallel
Strand 3	A	286	292	anti-parallel
Strand 4	A	310	312	anti-parallel
Strand 5	A	317	320	anti-parallel
Strand 6	A	339	340	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	54	first strand
Strand 2	A	269	276	anti-parallel
Strand 3	A	258	262	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	B	370	373	anti-parallel
Strand 3	B	376	379	anti-parallel
Strand 4	B	404	406	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	156	first strand
Strand 2	A	162	163	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	297	first strand
Strand 2	A	300	304	anti-parallel
Strand 3	A	359	362	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	404	406	first strand
Strand 2	A	376	379	anti-parallel
Strand 3	A	370	373	anti-parallel
Strand 4	C	116	117	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	394	first strand
Strand 2	A	386	388	anti-parallel
Strand 3	A	413	416	anti-parallel
Strand 4	A	419	422	anti-parallel
Strand 5	C	107	110	parallel
Strand 6	C	96	97	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	281	first strand
Strand 2	B	32	43	anti-parallel
Strand 3	B	286	292	anti-parallel
Strand 4	B	309	312	anti-parallel
Strand 5	B	317	318	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	281	first strand
Strand 2	B	32	43	anti-parallel
Strand 3	B	331	334	parallel
Strand 4	B	326	327	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	54	first strand
Strand 2	B	269	276	anti-parallel
Strand 3	B	257	262	anti-parallel
Strand 4	B	220	221	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	96	first strand
Strand 2	B	108	110	anti-parallel
Strand 3	C	419	422	parallel
Strand 4	C	413	416	anti-parallel
Strand 5	C	386	388	anti-parallel
Strand 6	C	393	394	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	C	370	373	anti-parallel
Strand 3	C	376	379	anti-parallel
Strand 4	C	404	406	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	156	first strand
Strand 2	B	162	163	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	297	first strand
Strand 2	B	300	304	anti-parallel
Strand 3	B	359	362	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	394	first strand
Strand 2	B	386	388	anti-parallel
Strand 3	B	413	416	anti-parallel
Strand 4	B	419	422	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	281	first strand
Strand 2	C	32	43	anti-parallel
Strand 3	C	286	292	anti-parallel
Strand 4	C	309	312	anti-parallel
Strand 5	C	317	318	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	281	first strand
Strand 2	C	32	43	anti-parallel
Strand 3	C	331	334	parallel
Strand 4	C	326	327	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	54	first strand
Strand 2	C	269	276	anti-parallel
Strand 3	C	257	262	anti-parallel
Strand 4	C	220	221	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	156	first strand
Strand 2	C	162	163	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	297	first strand
Strand 2	C	300	304	anti-parallel
Strand 3	C	359	362	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MNH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MNH