Analysis of interatomic Contacts of Structural Units in PDB entry:
9MNI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MNI entry

There are 3 chains in PDB entry 9MNI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 ASN 31LYS 142
R
 GLN 33TYR 402
A
 ASN 1GLU 68
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9MNI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
31 49Right-handed alpha
Helix 2
AA2
E
58 81Right-handed alpha
Helix 3
AA3
E
88 100Right-handed alpha
Helix 4
AA4
E
101 104Right-handed 310
Helix 5
AA5
E
115 118Right-handed 310
Helix 6
AA6
E
119 140Right-handed alpha
Helix 7
AA7
R
33 36Right-handed 310
Helix 8
AA8
R
37 54Right-handed alpha
Helix 9
AA9
R
131 166Right-handed alpha
Helix 10
AB1
R
167 170Right-handed 310
Helix 11
AB2
R
171 196Right-handed alpha
Helix 12
AB3
R
201 207Right-handed alpha
Helix 13
AB4
R
209 243Right-handed alpha
Helix 14
AB5
R
252 261Right-handed alpha
Helix 15
AB6
R
263 277Right-handed alpha
Helix 16
AB7
R
280 284Right-handed 310
Helix 17
AB8
R
288 290Right-handed 310
Helix 18
AB9
R
291 318Right-handed alpha
Helix 19
AC1
R
330 347Right-handed alpha
Helix 20
AC2
R
347 352Right-handed alpha
Helix 21
AC3
R
364 375Right-handed alpha
Helix 22
AC4
R
375 386Right-handed alpha
Helix 23
AC5
R
388 402Right-handed alpha
Helix 24
AC6
A
2 20Right-handed alpha
Helix 25
AC7
A
22 39Right-handed alpha
Helix 26
AC8
A
43 68Right-handed alpha
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There are 3 sheets in PDB entry 9MNI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
68 69first strand
Strand 2
R
74 75anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
82 87first strand
Strand 2
R
100 105anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
113 114first strand
Strand 2
R
119 120anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il