Analysis of interatomic Contacts of Structural Units in PDB entry:
9MNY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MNY entry

There are 6 chains in PDB entry 9MNY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 8GLN 115
B
 ARG 7ALA 123
D
 ASP 1SER 123
E
 ASN 1GLU 110
C
 GLN 1HIS 123
F
 ALA 363ALA 467
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9MNY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 14Right-handed alpha
Helix 2
AA2
A
15 24Right-handed alpha
Helix 3
AA3
A
24 34Right-handed alpha
Helix 4
AA4
A
34 44Right-handed alpha
Helix 5
AA5
A
45 46Right-handed 310
Helix 6
AA6
A
47 51Right-handed 310
Helix 7
AA7
A
52 73Right-handed alpha
Helix 8
AA8
A
77 112Right-handed alpha
Helix 9
AA9
B
8 24Right-handed alpha
Helix 10
AB1
B
25 28Right-handed 310
Helix 11
AB2
B
40 58Right-handed alpha
Helix 12
AB3
B
63 67Right-handed 310
Helix 13
AB4
B
68 89Right-handed alpha
Helix 14
AB5
B
93 123Right-handed alpha
Helix 15
AB6
D
74 76Right-handed 310
Helix 16
AB7
C
61 64Right-handed 310
Helix 17
AB8
C
86 90Right-handed 310
Helix 18
AB9
F
364 370Right-handed alpha
Helix 19
AC1
F
374 387Right-handed alpha
Helix 20
AC2
F
391 406Right-handed alpha
Helix 21
AC3
F
421 429Right-handed alpha
Helix 22
AC4
F
434 448Right-handed alpha
Helix 23
AC5
F
451 464Right-handed alpha
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There are 9 sheets in PDB entry 9MNY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 7first strand
Strand 2
D
17 25anti-parallel
Strand 3
D
78 84anti-parallel
Strand 4
D
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 12first strand
Strand 2
D
118 121parallel
Strand 3
D
92 99anti-parallel
Strand 4
D
33 39anti-parallel
Strand 5
D
45 51anti-parallel
Strand 6
D
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 5first strand
Strand 2
E
19 25anti-parallel
Strand 3
E
76 81anti-parallel
Strand 4
E
68 72anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 11first strand
Strand 2
E
107 109parallel
Strand 3
E
91 96anti-parallel
Strand 4
E
39 44anti-parallel
Strand 5
E
51 55anti-parallel
Strand 6
E
59 60anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 11first strand
Strand 2
E
107 109parallel
Strand 3
E
91 96anti-parallel
Strand 4
E
102 103anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 4first strand
Strand 2
C
24 26anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
112 117parallel
Strand 3
C
91 100anti-parallel
Strand 4
C
30 39anti-parallel
Strand 5
C
46 51anti-parallel
Strand 6
C
57 59anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
112 117parallel
Strand 3
C
91 100anti-parallel
Strand 4
C
105 108anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
18 20first strand
Strand 2
C
78 82anti-parallel
Strand 3
C
67 71anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il