Analysis of interatomic Contacts of Structural Units in PDB entry:
9MPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MPD entry

There are 6 chains in PDB entry 9MPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 349MET 457
B
 GLU 352MET 457
C
 TRP 1THR 2
C
 ILE 4CYS 17
D
 TRP 1THR 2
D
 ILE 4CYS 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 9MPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
349 365Right-handed alpha
Helix 2
AA2
A
366 368Right-handed 310
Helix 3
AA3
A
369 374Right-handed alpha
Helix 4
AA4
A
375 377Right-handed 310
Helix 5
AA5
A
381 386Right-handed alpha
Helix 6
AA6
A
389 394Right-handed alpha
Helix 7
AA7
A
399 409Right-handed alpha
Helix 8
AA8
A
414 433Right-handed alpha
Helix 9
AA9
A
437 456Right-handed alpha
Helix 10
AB1
B
353 365Right-handed alpha
Helix 11
AB2
B
366 368Right-handed 310
Helix 12
AB3
B
369 374Right-handed alpha
Helix 13
AB4
B
375 377Right-handed 310
Helix 14
AB5
B
381 386Right-handed alpha
Helix 15
AB6
B
389 394Right-handed alpha
Helix 16
AB7
B
399 409Right-handed alpha
Helix 17
AB8
B
414 433Right-handed alpha
Helix 18
AB9
B
437 456Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9MPD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 6first strand
Strand 2
C
10 14anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 6first strand
Strand 2
D
10 14anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il