Analysis of interatomic Contacts of Structural Units in PDB entry:
9MPO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MPO entry

There are 6 chains in PDB entry 9MPO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 476	VAL 912
B	VAL 622	VAL 912
C	VAL 622	VAL 912
D	ARG 476	VAL 912
E	ARG 476	VAL 912
F	ARG 476	VAL 912

There are102 helices in PDB entry 9MPO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	476	485	Right-handed alpha
Helix 2	AA2	A	489	493	Right-handed 310
Helix 3	AA3	A	514	525	Right-handed alpha
Helix 4	AA4	A	560	567	Right-handed alpha
Helix 5	AA5	A	570	577	Right-handed alpha
Helix 6	AA6	A	600	611	Right-handed alpha
Helix 7	AA7	A	627	631	Right-handed 310
Helix 8	AA8	A	644	653	Right-handed alpha
Helix 9	AA9	A	666	677	Right-handed alpha
Helix 10	AB1	A	686	690	Right-handed 310
Helix 11	AB2	A	691	698	Right-handed alpha
Helix 12	AB3	A	726	742	Right-handed alpha
Helix 13	AB4	A	762	774	Right-handed alpha
Helix 14	AB5	A	783	785	Right-handed 310
Helix 15	AB6	A	815	819	Right-handed 310
Helix 16	AB7	A	860	869	Right-handed alpha
Helix 17	AB8	A	881	891	Right-handed alpha
Helix 18	AB9	A	894	903	Right-handed alpha
Helix 19	AC1	A	904	908	Right-handed 310
Helix 20	AC2	B	627	631	Right-handed 310
Helix 21	AC3	B	644	653	Right-handed alpha
Helix 22	AC4	B	666	677	Right-handed alpha
Helix 23	AC5	B	686	690	Right-handed 310
Helix 24	AC6	B	691	698	Right-handed alpha
Helix 25	AC7	B	726	742	Right-handed alpha
Helix 26	AC8	B	762	774	Right-handed alpha
Helix 27	AC9	B	783	785	Right-handed 310
Helix 28	AD1	B	815	819	Right-handed 310
Helix 29	AD2	B	860	869	Right-handed alpha
Helix 30	AD3	B	881	891	Right-handed alpha
Helix 31	AD4	B	894	903	Right-handed alpha
Helix 32	AD5	B	904	908	Right-handed 310
Helix 33	AD6	C	627	631	Right-handed 310
Helix 34	AD7	C	644	653	Right-handed alpha
Helix 35	AD8	C	666	677	Right-handed alpha
Helix 36	AD9	C	686	690	Right-handed 310
Helix 37	AE1	C	691	698	Right-handed alpha
Helix 38	AE2	C	726	742	Right-handed alpha
Helix 39	AE3	C	762	774	Right-handed alpha
Helix 40	AE4	C	783	785	Right-handed 310
Helix 41	AE5	C	815	819	Right-handed 310
Helix 42	AE6	C	860	869	Right-handed alpha
Helix 43	AE7	C	881	891	Right-handed alpha
Helix 44	AE8	C	894	903	Right-handed alpha
Helix 45	AE9	C	904	908	Right-handed 310
Helix 46	AF1	D	477	485	Right-handed alpha
Helix 47	AF2	D	489	493	Right-handed 310
Helix 48	AF3	D	514	525	Right-handed alpha
Helix 49	AF4	D	560	567	Right-handed alpha
Helix 50	AF5	D	570	577	Right-handed alpha
Helix 51	AF6	D	600	611	Right-handed alpha
Helix 52	AF7	D	627	631	Right-handed 310
Helix 53	AF8	D	644	653	Right-handed alpha
Helix 54	AF9	D	666	677	Right-handed alpha
Helix 55	AG1	D	686	690	Right-handed 310
Helix 56	AG2	D	691	698	Right-handed alpha
Helix 57	AG3	D	726	742	Right-handed alpha
Helix 58	AG4	D	762	774	Right-handed alpha
Helix 59	AG5	D	783	785	Right-handed 310
Helix 60	AG6	D	815	819	Right-handed 310
Helix 61	AG7	D	860	869	Right-handed alpha
Helix 62	AG8	D	881	891	Right-handed alpha
Helix 63	AG9	D	894	903	Right-handed alpha
Helix 64	AH1	D	904	908	Right-handed 310
Helix 65	AH2	E	477	485	Right-handed alpha
Helix 66	AH3	E	489	493	Right-handed 310
Helix 67	AH4	E	514	525	Right-handed alpha
Helix 68	AH5	E	560	567	Right-handed alpha
Helix 69	AH6	E	570	577	Right-handed alpha
Helix 70	AH7	E	600	611	Right-handed alpha
Helix 71	AH8	E	627	631	Right-handed 310
Helix 72	AH9	E	644	653	Right-handed alpha
Helix 73	AI1	E	666	677	Right-handed alpha
Helix 74	AI2	E	686	690	Right-handed 310
Helix 75	AI3	E	691	698	Right-handed alpha
Helix 76	AI4	E	726	742	Right-handed alpha
Helix 77	AI5	E	762	774	Right-handed alpha
Helix 78	AI6	E	783	785	Right-handed 310
Helix 79	AI7	E	815	819	Right-handed 310
Helix 80	AI8	E	860	869	Right-handed alpha
Helix 81	AI9	E	881	891	Right-handed alpha
Helix 82	AJ1	E	894	903	Right-handed alpha
Helix 83	AJ2	E	904	908	Right-handed 310
Helix 84	AJ3	F	477	485	Right-handed alpha
Helix 85	AJ4	F	489	493	Right-handed 310
Helix 86	AJ5	F	514	525	Right-handed alpha
Helix 87	AJ6	F	560	567	Right-handed alpha
Helix 88	AJ7	F	570	577	Right-handed alpha
Helix 89	AJ8	F	600	611	Right-handed alpha
Helix 90	AJ9	F	627	631	Right-handed 310
Helix 91	AK1	F	644	653	Right-handed alpha
Helix 92	AK2	F	666	677	Right-handed alpha
Helix 93	AK3	F	686	690	Right-handed 310
Helix 94	AK4	F	691	698	Right-handed alpha
Helix 95	AK5	F	726	742	Right-handed alpha
Helix 96	AK6	F	762	774	Right-handed alpha
Helix 97	AK7	F	783	785	Right-handed 310
Helix 98	AK8	F	815	819	Right-handed 310
Helix 99	AK9	F	860	869	Right-handed alpha
Helix 100	AL1	F	881	891	Right-handed alpha
Helix 101	AL2	F	894	903	Right-handed alpha
Helix 102	AL3	F	904	908	Right-handed 310

There are 26 sheets in PDB entry 9MPO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	504	505	first strand
Strand 2	A	512	513	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	546	548	first strand
Strand 2	A	557	559	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	682	684	first strand
Strand 2	A	657	663	parallel
Strand 3	A	634	639	parallel
Strand 4	A	703	707	parallel
Strand 5	A	752	758	parallel
Strand 6	A	791	796	anti-parallel
Strand 7	A	778	781	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	788	789	first strand
Strand 2	A	830	831	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	850	852	first strand
Strand 2	A	855	857	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	682	684	first strand
Strand 2	B	657	663	parallel
Strand 3	B	634	639	parallel
Strand 4	B	703	707	parallel
Strand 5	B	752	758	parallel
Strand 6	B	791	796	anti-parallel
Strand 7	B	778	781	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	788	789	first strand
Strand 2	B	830	831	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	850	852	first strand
Strand 2	B	855	857	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	682	684	first strand
Strand 2	C	657	663	parallel
Strand 3	C	634	639	parallel
Strand 4	C	703	707	parallel
Strand 5	C	752	758	parallel
Strand 6	C	791	796	anti-parallel
Strand 7	C	778	781	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	788	789	first strand
Strand 2	C	830	831	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	850	852	first strand
Strand 2	C	855	857	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	504	505	first strand
Strand 2	D	512	513	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	546	548	first strand
Strand 2	D	557	559	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	682	684	first strand
Strand 2	D	657	663	parallel
Strand 3	D	634	639	parallel
Strand 4	D	703	707	parallel
Strand 5	D	752	758	parallel
Strand 6	D	791	796	anti-parallel
Strand 7	D	778	781	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	788	789	first strand
Strand 2	D	830	831	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	850	852	first strand
Strand 2	D	855	857	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	504	505	first strand
Strand 2	E	512	513	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	546	548	first strand
Strand 2	E	557	559	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	682	684	first strand
Strand 2	E	657	663	parallel
Strand 3	E	634	639	parallel
Strand 4	E	703	707	parallel
Strand 5	E	752	758	parallel
Strand 6	E	791	796	anti-parallel
Strand 7	E	778	781	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	788	789	first strand
Strand 2	E	830	831	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	850	852	first strand
Strand 2	E	855	857	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	504	505	first strand
Strand 2	F	512	513	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	546	548	first strand
Strand 2	F	557	559	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	682	684	first strand
Strand 2	F	657	663	parallel
Strand 3	F	634	639	parallel
Strand 4	F	703	707	parallel
Strand 5	F	752	758	parallel
Strand 6	F	791	796	anti-parallel
Strand 7	F	778	781	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	788	789	first strand
Strand 2	F	830	831	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	850	852	first strand
Strand 2	F	855	857	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MPO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MPO