Analysis of interatomic Contacts of Structural Units in PDB entry:
9MPP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MPP entry

There are 14 chains in PDB entry 9MPP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 36	ALA 135
B	VAL 21	GLY 102
C	ALA 14	SER 113
D	LYS 21	LYS 122
E	VAL 35	ALA 135
F	ARG 17	GLY 102
G	LYS 9	LYS 124
H	LYS 24	LYS 122
I	T 2	T 167
J	A 1	A 166
M	ARG 474	VAL 912
N	GLY 34	SER 379
K	PRO 620	VAL 912
L	GLU 177	SER 379

There are 86 helices in PDB entry 9MPP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	56	Right-handed alpha
Helix 2	AA2	A	63	76	Right-handed alpha
Helix 3	AA3	A	85	114	Right-handed alpha
Helix 4	AA4	A	120	131	Right-handed alpha
Helix 5	AA5	B	30	41	Right-handed alpha
Helix 6	AA6	B	49	76	Right-handed alpha
Helix 7	AA7	B	82	93	Right-handed alpha
Helix 8	AA8	C	16	21	Right-handed alpha
Helix 9	AA9	C	26	37	Right-handed alpha
Helix 10	AB1	C	46	73	Right-handed alpha
Helix 11	AB2	C	79	90	Right-handed alpha
Helix 12	AB3	C	90	97	Right-handed alpha
Helix 13	AB4	D	34	46	Right-handed alpha
Helix 14	AB5	D	52	81	Right-handed alpha
Helix 15	AB6	D	87	99	Right-handed alpha
Helix 16	AB7	D	101	120	Right-handed alpha
Helix 17	AB8	E	45	56	Right-handed alpha
Helix 18	AB9	E	63	76	Right-handed alpha
Helix 19	AC1	E	85	114	Right-handed alpha
Helix 20	AC2	E	120	131	Right-handed alpha
Helix 21	AC3	F	25	29	Right-handed 310
Helix 22	AC4	F	30	41	Right-handed alpha
Helix 23	AC5	F	49	76	Right-handed alpha
Helix 24	AC6	F	82	93	Right-handed alpha
Helix 25	AC7	G	16	22	Right-handed alpha
Helix 26	AC8	G	26	37	Right-handed alpha
Helix 27	AC9	G	45	73	Right-handed alpha
Helix 28	AD1	G	79	90	Right-handed alpha
Helix 29	AD2	G	90	97	Right-handed alpha
Helix 30	AD3	H	34	46	Right-handed alpha
Helix 31	AD4	H	52	81	Right-handed alpha
Helix 32	AD5	H	87	99	Right-handed alpha
Helix 33	AD6	H	101	120	Right-handed alpha
Helix 34	AD7	M	475	485	Right-handed alpha
Helix 35	AD8	M	489	493	Right-handed 310
Helix 36	AD9	M	514	525	Right-handed alpha
Helix 37	AE1	M	560	567	Right-handed alpha
Helix 38	AE2	M	570	578	Right-handed alpha
Helix 39	AE3	M	600	609	Right-handed alpha
Helix 40	AE4	M	627	631	Right-handed 310
Helix 41	AE5	M	644	653	Right-handed alpha
Helix 42	AE6	M	666	677	Right-handed alpha
Helix 43	AE7	M	686	690	Right-handed 310
Helix 44	AE8	M	691	698	Right-handed alpha
Helix 45	AE9	M	729	742	Right-handed alpha
Helix 46	AF1	M	762	773	Right-handed alpha
Helix 47	AF2	M	783	785	Right-handed 310
Helix 48	AF3	M	860	868	Right-handed alpha
Helix 49	AF4	M	881	892	Right-handed alpha
Helix 50	AF5	M	894	903	Right-handed alpha
Helix 51	AF6	M	904	908	Right-handed 310
Helix 52	AF7	N	39	44	Right-handed alpha
Helix 53	AF8	N	48	52	Right-handed 310
Helix 54	AF9	N	73	86	Right-handed alpha
Helix 55	AG1	N	118	126	Right-handed alpha
Helix 56	AG2	N	130	137	Right-handed alpha
Helix 57	AG3	N	159	172	Right-handed alpha
Helix 58	AG4	N	199	206	Right-handed alpha
Helix 59	AG5	N	228	235	Right-handed alpha
Helix 60	AG6	N	256	271	Right-handed alpha
Helix 61	AG7	N	291	302	Right-handed alpha
Helix 62	AG8	N	330	334	Right-handed 310
Helix 63	AG9	N	339	354	Right-handed alpha
Helix 64	AH1	N	360	366	Right-handed alpha
Helix 65	AH2	N	367	374	Right-handed 310
Helix 66	AH3	K	627	631	Right-handed 310
Helix 67	AH4	K	644	653	Right-handed alpha
Helix 68	AH5	K	666	678	Right-handed alpha
Helix 69	AH6	K	686	690	Right-handed 310
Helix 70	AH7	K	691	698	Right-handed alpha
Helix 71	AH8	K	727	729	Right-handed 310
Helix 72	AH9	K	730	742	Right-handed alpha
Helix 73	AI1	K	762	773	Right-handed alpha
Helix 74	AI2	K	782	787	Right-handed alpha
Helix 75	AI3	K	814	819	Right-handed alpha
Helix 76	AI4	K	860	869	Right-handed alpha
Helix 77	AI5	K	881	892	Right-handed alpha
Helix 78	AI6	K	894	903	Right-handed alpha
Helix 79	AI7	K	904	908	Right-handed 310
Helix 80	AI8	L	183	187	Right-handed 310
Helix 81	AI9	L	199	206	Right-handed alpha
Helix 82	AJ1	L	228	235	Right-handed alpha
Helix 83	AJ2	L	255	271	Right-handed alpha
Helix 84	AJ3	L	291	302	Right-handed alpha
Helix 85	AJ4	L	339	353	Right-handed alpha
Helix 86	AJ5	L	365	374	Right-handed 310

There are 21 sheets in PDB entry 9MPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	100	102	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	F	96	98	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	50	51	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	504	505	first strand
Strand 2	M	512	513	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	546	548	first strand
Strand 2	M	557	559	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	591	592	first strand
Strand 2	M	595	596	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	681	683	first strand
Strand 2	M	657	662	parallel
Strand 3	M	634	639	parallel
Strand 4	M	703	707	parallel
Strand 5	M	752	758	parallel
Strand 6	M	791	796	anti-parallel
Strand 7	M	778	781	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	788	789	first strand
Strand 2	M	830	831	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	823	825	first strand
Strand 2	M	850	852	anti-parallel
Strand 3	M	855	857	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	63	64	first strand
Strand 2	N	71	72	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	218	221	first strand
Strand 2	N	192	195	parallel
Strand 3	N	240	244	parallel
Strand 4	N	281	286	parallel
Strand 5	N	320	325	anti-parallel
Strand 6	N	308	310	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	682	683	first strand
Strand 2	K	657	662	parallel
Strand 3	K	634	638	parallel
Strand 4	K	703	706	parallel
Strand 5	K	752	758	parallel
Strand 6	K	791	796	anti-parallel
Strand 7	K	778	781	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	788	789	first strand
Strand 2	K	830	831	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	823	825	first strand
Strand 2	K	850	852	anti-parallel
Strand 3	K	855	857	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	218	220	first strand
Strand 2	L	192	194	parallel
Strand 3	L	240	244	parallel
Strand 4	L	281	286	parallel
Strand 5	L	321	325	anti-parallel
Strand 6	L	307	309	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MPP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MPP