Analysis of interatomic Contacts of Structural Units in PDB entry:
9MPS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MPS entry

There are 4 chains in PDB entry 9MPS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 VAL 546ALA 671
A
 VAL 471SER 765
E
 TRP 476PRO 774
F
 VAL 471PRO 774
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 9MPS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
621 634Right-handed alpha
Helix 2
AA2
D
639 656Right-handed alpha
Helix 3
AA3
A
475 479Right-handed 310
Helix 4
AA4
A
482 494Right-handed alpha
Helix 5
AA5
A
494 499Right-handed alpha
Helix 6
AA6
A
499 507Right-handed alpha
Helix 7
AA7
A
523 536Right-handed alpha
Helix 8
AA8
A
543 553Right-handed alpha
Helix 9
AA9
A
557 569Right-handed alpha
Helix 10
AB1
A
580 586Right-handed alpha
Helix 11
AB2
A
598 610Right-handed alpha
Helix 12
AB3
A
625 629Right-handed 310
Helix 13
AB4
A
649 662Right-handed alpha
Helix 14
AB5
A
671 678Right-handed alpha
Helix 15
AB6
A
683 710Right-handed alpha
Helix 16
AB7
A
732 740Right-handed alpha
Helix 17
AB8
A
741 743Right-handed 310
Helix 18
AB9
A
748 765Right-handed alpha
Helix 19
AC1
E
482 499Right-handed alpha
Helix 20
AC2
E
499 506Right-handed alpha
Helix 21
AC3
E
523 536Right-handed alpha
Helix 22
AC4
E
543 552Right-handed alpha
Helix 23
AC5
E
557 569Right-handed alpha
Helix 24
AC6
E
580 587Right-handed alpha
Helix 25
AC7
E
598 610Right-handed alpha
Helix 26
AC8
E
625 629Right-handed 310
Helix 27
AC9
E
630 635Right-handed 310
Helix 28
AD1
E
751 762Right-handed alpha
Helix 29
AD2
F
475 479Right-handed 310
Helix 30
AD3
F
482 493Right-handed alpha
Helix 31
AD4
F
493 499Right-handed alpha
Helix 32
AD5
F
499 507Right-handed alpha
Helix 33
AD6
F
523 535Right-handed alpha
Helix 34
AD7
F
543 553Right-handed alpha
Helix 35
AD8
F
557 569Right-handed alpha
Helix 36
AD9
F
580 586Right-handed alpha
Helix 37
AE1
F
598 610Right-handed alpha
Helix 38
AE2
F
630 635Right-handed 310
Helix 39
AE3
F
649 661Right-handed alpha
Helix 40
AE4
F
673 679Right-handed alpha
Helix 41
AE5
F
683 700Right-handed alpha
Helix 42
AE6
F
732 742Right-handed alpha
Helix 43
AE7
F
748 765Right-handed alpha
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There are 5 sheets in PDB entry 9MPS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
562 566first strand
Strand 2
D
576 580anti-parallel
Strand 3
D
583 585anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
592 598first strand
Strand 2
D
601 607anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 542first strand
Strand 2
A
572 576parallel
Strand 3
A
617 623parallel
Strand 4
A
513 517parallel
Strand 5
A
641 644parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
538 542first strand
Strand 2
E
572 576parallel
Strand 3
E
617 623parallel
Strand 4
E
513 517parallel
Strand 5
E
641 644parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
538 542first strand
Strand 2
F
572 576parallel
Strand 3
F
617 621parallel
Strand 4
F
513 517parallel
Strand 5
F
641 644parallel
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