Analysis of interatomic Contacts of Structural Units in PDB entry:
9MPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MPT entry

There are 2 chains in PDB entry 9MPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 773LEU 851
A
 ARG 22VAL 474
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9MPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
796 808Right-handed alpha
Helix 2
AA2
A
42 49Right-handed alpha
Helix 3
AA3
A
85 92Right-handed alpha
Helix 4
AA4
A
120 123Right-handed 310
Helix 5
AA5
A
134 140Right-handed alpha
Helix 6
AA6
A
202 206Right-handed 310
Helix 7
AA7
A
209 226Right-handed alpha
Helix 8
AA8
A
226 233Right-handed alpha
Helix 9
AA9
A
250 262Right-handed alpha
Helix 10
AB1
A
271 277Right-handed alpha
Helix 11
AB2
A
280 296Right-handed alpha
Helix 12
AB3
A
305 310Right-handed alpha
Helix 13
AB4
A
318 335Right-handed alpha
Helix 14
AB5
A
349 353Right-handed 310
Helix 15
AB6
A
373 385Right-handed alpha
Helix 16
AB7
A
395 403Right-handed alpha
Helix 17
AB8
A
407 428Right-handed alpha
Helix 18
AB9
A
438 445Right-handed alpha
Helix 19
AC1
A
448 458Right-handed alpha
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There are 6 sheets in PDB entry 9MPT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
787 791first strand
Strand 2
B
775 781anti-parallel
Strand 3
B
845 848parallel
Strand 4
B
817 819anti-parallel
Strand 5
B
824 826anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 84first strand
Strand 2
A
25 30parallel
Strand 3
A
99 101anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
66 73parallel
Strand 3
A
56 60anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 156first strand
Strand 2
A
159 168anti-parallel
Strand 3
A
113 118anti-parallel
Strand 4
A
181 183parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
173 175anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 270first strand
Strand 2
A
299 304parallel
Strand 3
A
341 347parallel
Strand 4
A
240 244parallel
Strand 5
A
365 368parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il