Analysis of interatomic Contacts of Structural Units in PDB entry:
9MPW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MPW entry

There are 3 chains in PDB entry 9MPW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
S	SER 708	GLU 1144
H	GLN 1	VAL 210
L	GLU 1	ARG 212

There are 19 helices in PDB entry 9MPW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	S	750	756	Right-handed alpha
Helix 2	AA2	S	757	783	Right-handed alpha
Helix 3	AA3	S	818	827	Right-handed alpha
Helix 4	AA4	S	832	842	Right-handed alpha
Helix 5	AA5	S	844	846	Right-handed 310
Helix 6	AA6	S	847	852	Right-handed alpha
Helix 7	AA7	S	866	878	Right-handed alpha
Helix 8	AA8	S	897	910	Right-handed alpha
Helix 9	AA9	S	912	919	Right-handed alpha
Helix 10	AB1	S	919	940	Right-handed alpha
Helix 11	AB2	S	948	968	Right-handed alpha
Helix 12	AB3	S	989	1031	Right-handed alpha
Helix 13	AB4	H	63	65	Right-handed 310
Helix 14	AB5	H	86	90	Right-handed 310
Helix 15	AB6	H	155	157	Right-handed 310
Helix 16	AB7	H	184	188	Right-handed 310
Helix 17	AB8	L	80	84	Right-handed 310
Helix 18	AB9	L	122	129	Right-handed alpha
Helix 19	AC1	L	184	188	Right-handed alpha

There are 13 sheets in PDB entry 9MPW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	712	727	first strand
Strand 2	S	1060	1078	anti-parallel
Strand 3	S	1047	1054	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	712	727	first strand
Strand 2	S	1060	1078	anti-parallel
Strand 3	S	1094	1097	anti-parallel
Strand 4	S	1102	1105	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	735	736	first strand
Strand 2	S	858	859	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	1120	1125	first strand
Strand 2	S	1086	1090	anti-parallel
Strand 3	S	1081	1083	anti-parallel
Strand 4	S	1133	1134	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	71	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	106	110	parallel
Strand 3	H	91	96	anti-parallel
Strand 4	H	34	38	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	59	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	123	first strand
Strand 2	H	135	144	anti-parallel
Strand 3	H	175	183	anti-parallel
Strand 4	H	163	164	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	120	123	first strand
Strand 2	H	135	144	anti-parallel
Strand 3	H	175	183	anti-parallel
Strand 4	H	168	169	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	150	153	first strand
Strand 2	H	194	198	anti-parallel
Strand 3	H	207	209	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	72	76	anti-parallel
Strand 4	L	63	67	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	107	parallel
Strand 3	L	85	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	116	119	first strand
Strand 2	L	130	140	anti-parallel
Strand 3	L	174	183	anti-parallel
Strand 4	L	160	164	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	146	151	first strand
Strand 2	L	193	198	anti-parallel
Strand 3	L	206	210	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MPW

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MPW