Analysis of interatomic Contacts of Structural Units in PDB entry:
9MQ8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MQ8 entry

There are 12 chains in PDB entry 9MQ8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 14	LEU 320
B	THR 39	LEU 124
C	CYS 14	ASN 322
D	GLN 40	LEU 124
E	CYS 14	ASN 322
F	THR 39	LEU 124
H	VAL 2	SER 113
I	VAL 2	SER 113
J	VAL 2	SER 113
L	ALA 3	LEU 106
M	ALA 3	LEU 106
N	ALA 3	LEU 106

There are 35 helices in PDB entry 9MQ8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	72	Right-handed alpha
Helix 2	AA2	A	104	112	Right-handed alpha
Helix 3	AA3	A	123	127	Right-handed 310
Helix 4	AA4	A	187	195	Right-handed alpha
Helix 5	AA5	B	46	56	Right-handed alpha
Helix 6	AA6	B	69	71	Right-handed 310
Helix 7	AA7	B	72	122	Right-handed alpha
Helix 8	AA8	C	65	72	Right-handed alpha
Helix 9	AA9	C	104	112	Right-handed alpha
Helix 10	AB1	C	123	127	Right-handed 310
Helix 11	AB2	C	187	195	Right-handed alpha
Helix 12	AB3	D	46	56	Right-handed alpha
Helix 13	AB4	D	69	71	Right-handed 310
Helix 14	AB5	D	72	94	Right-handed alpha
Helix 15	AB6	D	95	116	Right-handed alpha
Helix 16	AB7	D	117	121	Right-handed 310
Helix 17	AB8	E	65	72	Right-handed alpha
Helix 18	AB9	E	73	77	Right-handed 310
Helix 19	AC1	E	105	111	Right-handed alpha
Helix 20	AC2	E	123	127	Right-handed 310
Helix 21	AC3	E	187	195	Right-handed alpha
Helix 22	AC4	F	46	55	Right-handed alpha
Helix 23	AC5	F	69	71	Right-handed 310
Helix 24	AC6	F	72	94	Right-handed alpha
Helix 25	AC7	F	96	122	Right-handed alpha
Helix 26	AC8	H	52	54	Right-handed 310
Helix 27	AC9	H	83	87	Right-handed 310
Helix 28	AD1	I	28	32	Right-handed 310
Helix 29	AD2	I	52	54	Right-handed 310
Helix 30	AD3	I	83	87	Right-handed 310
Helix 31	AD4	J	28	32	Right-handed 310
Helix 32	AD5	J	52	54	Right-handed 310
Helix 33	AD6	J	83	87	Right-handed 310
Helix 34	AD7	M	79	83	Right-handed 310
Helix 35	AD8	N	79	83	Right-handed 310

There are 39 sheets in PDB entry 9MQ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	26	first strand
Strand 2	A	34	36	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	315	316	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	87	89	parallel
Strand 3	A	268	269	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	229	237	parallel
Strand 3	A	175	184	anti-parallel
Strand 4	A	257	259	anti-parallel
Strand 5	A	119	121	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	229	237	parallel
Strand 3	A	175	184	anti-parallel
Strand 4	A	251	254	anti-parallel
Strand 5	A	151	153	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	141	first strand
Strand 2	A	144	146	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	168	first strand
Strand 2	A	243	247	anti-parallel
Strand 3	A	202	205	anti-parallel
Strand 4	A	210	213	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	286	288	first strand
Strand 2	A	281	283	anti-parallel
Strand 3	A	302	303	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	26	first strand
Strand 2	C	34	36	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	39	41	first strand
Strand 2	C	315	317	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	87	88	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	C	229	237	parallel
Strand 3	C	176	184	anti-parallel
Strand 4	C	251	254	anti-parallel
Strand 5	C	151	153	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	121	first strand
Strand 2	C	257	258	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	141	first strand
Strand 2	C	144	146	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	168	first strand
Strand 2	C	243	247	anti-parallel
Strand 3	C	202	205	anti-parallel
Strand 4	C	210	213	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	281	283	first strand
Strand 2	C	286	288	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	40	41	first strand
Strand 2	E	315	316	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	60	first strand
Strand 2	E	87	89	parallel
Strand 3	E	268	269	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	102	first strand
Strand 2	E	229	237	parallel
Strand 3	E	176	184	anti-parallel
Strand 4	E	251	254	anti-parallel
Strand 5	E	151	153	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	121	first strand
Strand 2	E	257	259	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	141	first strand
Strand 2	E	144	146	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	168	first strand
Strand 2	E	243	247	anti-parallel
Strand 3	E	202	205	anti-parallel
Strand 4	E	210	213	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	281	283	first strand
Strand 2	E	286	288	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	17	23	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	68	72	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	98	anti-parallel
Strand 4	H	34	40	anti-parallel
Strand 5	H	44	51	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	107	111	parallel
Strand 3	H	88	98	anti-parallel
Strand 4	H	100	103	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	6	first strand
Strand 2	I	17	23	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	68	72	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	11	first strand
Strand 2	I	107	110	parallel
Strand 3	I	89	94	anti-parallel
Strand 4	I	34	40	anti-parallel
Strand 5	I	44	51	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	6	first strand
Strand 2	J	18	23	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	68	72	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	107	111	parallel
Strand 3	J	88	94	anti-parallel
Strand 4	J	34	40	anti-parallel
Strand 5	J	44	51	anti-parallel
Strand 6	J	58	59	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	18	24	first strand
Strand 2	L	70	76	anti-parallel
Strand 3	L	62	67	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	35	37	first strand
Strand 2	L	45	48	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	89	90	first strand
Strand 2	L	97	98	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	18	24	first strand
Strand 2	M	70	76	anti-parallel
Strand 3	M	62	67	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	45	48	first strand
Strand 2	M	34	37	anti-parallel
Strand 3	M	88	90	anti-parallel
Strand 4	M	97	98	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	85	86	first strand
Strand 2	M	102	103	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	19	24	first strand
Strand 2	N	70	75	anti-parallel
Strand 3	N	62	67	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	45	48	first strand
Strand 2	N	35	38	anti-parallel
Strand 3	N	85	87	anti-parallel
Strand 4	N	102	103	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	89	90	first strand
Strand 2	N	97	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MQ8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MQ8