Analysis of interatomic Contacts of Structural Units in PDB entry:
9MQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MQF entry

There is 1 chain in PDB entry 9MQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 86SER 389
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 9MQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
98 102Right-handed 310
Helix 2
AA2
A
109 130Right-handed alpha
Helix 3
AA3
A
216 224Right-handed alpha
Helix 4
AA4
A
225 227Right-handed 310
Helix 5
AA5
A
236 240Right-handed 310
Helix 6
AA6
A
272 281Right-handed alpha
Helix 7
AA7
A
282 284Right-handed 310
Helix 8
AA8
A
285 291Right-handed alpha
Helix 9
AA9
A
320 325Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9MQF.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 96first strand
Strand 2
A
165 175anti-parallel
Strand 3
A
179 188anti-parallel
Strand 4
A
194 206anti-parallel
Strand 5
A
145 156anti-parallel
Strand 6
A
294 302anti-parallel
Strand 7
A
365 375anti-parallel
Strand 8
A
350 359anti-parallel
Strand 9
A
311 318anti-parallel
Strand 10
A
253 259anti-parallel
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