Analysis of interatomic Contacts of Structural Units in PDB entry:
9MQM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MQM entry

There is 1 chain in PDB entry 9MQM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 22LEU 909
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 9MQM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 33Right-handed alpha
Helix 2
AA2
A
34 42Right-handed alpha
Helix 3
AA3
A
50 61Right-handed alpha
Helix 4
AA4
A
73 82Right-handed alpha
Helix 5
AA5
A
86 102Right-handed alpha
Helix 6
AA6
A
112 132Right-handed alpha
Helix 7
AA7
A
134 139Right-handed alpha
Helix 8
AA8
A
198 203Right-handed alpha
Helix 9
AA9
A
247 250Right-handed 310
Helix 10
AB1
A
251 257Right-handed alpha
Helix 11
AB2
A
268 282Right-handed alpha
Helix 12
AB3
A
286 299Right-handed alpha
Helix 13
AB4
A
301 317Right-handed alpha
Helix 14
AB5
A
322 338Right-handed alpha
Helix 15
AB6
A
347 354Right-handed alpha
Helix 16
AB7
A
385 397Right-handed alpha
Helix 17
AB8
A
403 417Right-handed alpha
Helix 18
AB9
A
454 458Right-handed 310
Helix 19
AC1
A
488 501Right-handed alpha
Helix 20
AC2
A
502 506Right-handed 310
Helix 21
AC3
A
525 529Right-handed 310
Helix 22
AC4
A
547 556Right-handed alpha
Helix 23
AC5
A
569 574Right-handed alpha
Helix 24
AC6
A
576 581Right-handed alpha
Helix 25
AC7
A
590 595Right-handed alpha
Helix 26
AC8
A
600 607Right-handed alpha
Helix 27
AC9
A
615 629Right-handed alpha
Helix 28
AD1
A
641 647Right-handed alpha
Helix 29
AD2
A
660 665Right-handed alpha
Helix 30
AD3
A
676 714Right-handed alpha
Helix 31
AD4
A
723 738Right-handed alpha
Helix 32
AD5
A
739 744Right-handed 310
Helix 33
AD6
A
747 752Right-handed 310
Helix 34
AD7
A
758 767Right-handed alpha
Helix 35
AD8
A
769 787Right-handed alpha
Helix 36
AD9
A
787 794Right-handed alpha
Helix 37
AE1
A
803 827Right-handed alpha
Helix 38
AE2
A
828 833Right-handed alpha
Helix 39
AE3
A
845 862Right-handed alpha
Helix 40
AE4
A
865 871Right-handed alpha
Helix 41
AE5
A
880 906Right-handed alpha
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There are 4 sheets in PDB entry 9MQM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 164first strand
Strand 2
A
150 155anti-parallel
Strand 3
A
173 176anti-parallel
Strand 4
A
234 246anti-parallel
Strand 5
A
185 197anti-parallel
Strand 6
A
208 210anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 164first strand
Strand 2
A
150 155anti-parallel
Strand 3
A
173 176anti-parallel
Strand 4
A
234 246anti-parallel
Strand 5
A
185 197anti-parallel
Strand 6
A
228 229anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 589first strand
Strand 2
A
610 612parallel
Strand 3
A
561 565parallel
Strand 4
A
357 360parallel
Strand 5
A
633 636parallel
Strand 6
A
652 653parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 436first strand
Strand 2
A
444 451anti-parallel
Strand 3
A
460 467anti-parallel
Strand 4
A
508 514anti-parallel
Strand 5
A
532 540anti-parallel
Strand 6
A
475 478parallel
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