Analysis of interatomic Contacts of Structural Units in PDB entry:
9MQY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MQY entry

There are 2 chains in PDB entry 9MQY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ALA 448
B	SER 2	ALA 448

There are 37 helices in PDB entry 9MQY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	30	Right-handed alpha
Helix 2	AA2	A	31	33	Right-handed 310
Helix 3	AA3	A	48	50	Right-handed 310
Helix 4	AA4	A	51	57	Right-handed alpha
Helix 5	AA5	A	61	65	Right-handed 310
Helix 6	AA6	A	68	73	Right-handed alpha
Helix 7	AA7	A	125	131	Right-handed 310
Helix 8	AA8	A	137	156	Right-handed alpha
Helix 9	AA9	A	160	168	Right-handed alpha
Helix 10	AB1	A	176	192	Right-handed alpha
Helix 11	AB2	A	202	206	Right-handed 310
Helix 12	AB3	A	218	220	Right-handed 310
Helix 13	AB4	A	221	236	Right-handed alpha
Helix 14	AB5	A	281	290	Right-handed alpha
Helix 15	AB6	A	318	321	Right-handed 310
Helix 16	AB7	A	329	349	Right-handed alpha
Helix 17	AB8	A	386	401	Right-handed alpha
Helix 18	AB9	A	403	420	Right-handed alpha
Helix 19	AC1	A	429	447	Right-handed alpha
Helix 20	AC2	B	20	30	Right-handed alpha
Helix 21	AC3	B	48	50	Right-handed 310
Helix 22	AC4	B	51	57	Right-handed alpha
Helix 23	AC5	B	61	66	Right-handed alpha
Helix 24	AC6	B	68	73	Right-handed alpha
Helix 25	AC7	B	125	131	Right-handed 310
Helix 26	AC8	B	137	156	Right-handed alpha
Helix 27	AC9	B	160	168	Right-handed alpha
Helix 28	AD1	B	176	192	Right-handed alpha
Helix 29	AD2	B	202	206	Right-handed 310
Helix 30	AD3	B	218	221	Right-handed 310
Helix 31	AD4	B	222	236	Right-handed alpha
Helix 32	AD5	B	281	291	Right-handed alpha
Helix 33	AD6	B	318	321	Right-handed 310
Helix 34	AD7	B	329	349	Right-handed alpha
Helix 35	AD8	B	387	401	Right-handed alpha
Helix 36	AD9	B	403	420	Right-handed alpha
Helix 37	AE1	B	429	447	Right-handed alpha

There are 12 sheets in PDB entry 9MQY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	83	first strand
Strand 2	A	35	41	parallel
Strand 3	A	12	17	parallel
Strand 4	A	111	114	parallel
Strand 5	A	311	316	parallel
Strand 6	A	307	308	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	90	first strand
Strand 2	A	95	100	anti-parallel
Strand 3	A	103	108	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	278	279	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	242	first strand
Strand 2	A	207	212	parallel
Strand 3	A	169	173	parallel
Strand 4	A	271	273	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	244	250	first strand
Strand 2	A	253	258	anti-parallel
Strand 3	A	263	267	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	371	first strand
Strand 2	A	374	379	anti-parallel
Strand 3	A	382	385	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	83	first strand
Strand 2	B	36	41	parallel
Strand 3	B	13	17	parallel
Strand 4	B	111	114	parallel
Strand 5	B	311	316	parallel
Strand 6	B	307	308	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	90	first strand
Strand 2	B	95	100	anti-parallel
Strand 3	B	103	108	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	278	279	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	242	first strand
Strand 2	B	207	212	parallel
Strand 3	B	169	173	parallel
Strand 4	B	271	273	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	250	first strand
Strand 2	B	253	257	anti-parallel
Strand 3	B	263	267	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	371	first strand
Strand 2	B	374	379	anti-parallel
Strand 3	B	382	386	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MQY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MQY