Analysis of interatomic Contacts of Structural Units in PDB entry:
9MR1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MR1 entry

There are 3 chains in PDB entry 9MR1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1SER 113
B
 ASP 1ILE 106
C
 PHE 718PRO 1069
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9MR1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
61 64Right-handed 310
Helix 2
AA2
A
83 87Right-handed 310
Helix 3
AA3
B
79 83Right-handed 310
Helix 4
AA4
C
737 742Right-handed alpha
Helix 5
AA5
C
758 782Right-handed alpha
Helix 6
AA6
C
817 826Right-handed alpha
Helix 7
AA7
C
866 883Right-handed alpha
Helix 8
AA8
C
900 906Right-handed alpha
Helix 9
AA9
C
924 935Right-handed alpha
Helix 10
AB1
C
946 968Right-handed alpha
Helix 11
AB2
C
976 984Right-handed alpha
Helix 12
AB3
C
985 1032Right-handed alpha
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There are 5 sheets in PDB entry 9MR1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
77 82anti-parallel
Strand 4
A
67 72anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
49 51anti-parallel
Strand 3
A
33 39anti-parallel
Strand 4
A
88 95anti-parallel
Strand 5
A
107 109anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 6first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
70 75anti-parallel
Strand 4
B
62 67anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
102 105parallel
Strand 3
B
84 90anti-parallel
Strand 4
B
33 38anti-parallel
Strand 5
B
45 49anti-parallel
Strand 6
B
53 54anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
719 727first strand
Strand 2
C
1059 1068anti-parallel
Strand 3
C
1047 1056anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il