Analysis of interatomic Contacts of Structural Units in PDB entry:
9MRD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MRD entry

There are 2 chains in PDB entry 9MRD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 54LEU 244
D
 A 298 A 301
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 9MRD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
97 105Right-handed alpha
Helix 2
AA2
A
124 139Right-handed alpha
Helix 3
AA3
A
154 166Right-handed alpha
Helix 4
AA4
A
168 176Right-handed alpha
Helix 5
AA5
A
182 190Right-handed alpha
Helix 6
AA6
A
198 207Right-handed alpha
Helix 7
AA7
A
215 231Right-handed alpha
Helix 8
AA8
A
233 240Right-handed alpha
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There are 2 sheets in PDB entry 9MRD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
74 81anti-parallel
Strand 3
A
55 64anti-parallel
Strand 4
A
143 148parallel
Strand 5
A
178 181parallel
Strand 6
A
241 243anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 109first strand
Strand 2
A
112 115anti-parallel
Strand 3
A
118 119anti-parallel
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