Analysis of interatomic Contacts of Structural Units in PDB entry:
9MRT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MRT entry

There are 4 chains in PDB entry 9MRT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	GLU 7	ARG 1166
A	GLU 7	ARG 1166
C	GLU 7	ARG 1166
D	GLU 7	ARG 1166

There are200 helices in PDB entry 9MRT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	10	15	Right-handed alpha
Helix 2	AA2	B	98	109	Right-handed alpha
Helix 3	AA3	B	131	140	Right-handed alpha
Helix 4	AA4	B	141	150	Right-handed alpha
Helix 5	AA5	B	160	176	Right-handed alpha
Helix 6	AA6	B	196	201	Right-handed 310
Helix 7	AA7	B	246	259	Right-handed alpha
Helix 8	AA8	B	281	294	Right-handed alpha
Helix 9	AA9	B	305	316	Right-handed alpha
Helix 10	AB1	B	331	339	Right-handed alpha
Helix 11	AB2	B	343	356	Right-handed alpha
Helix 12	AB3	B	357	359	Right-handed 310
Helix 13	AB4	B	373	384	Right-handed alpha
Helix 14	AB5	B	393	404	Right-handed alpha
Helix 15	AB6	B	405	413	Right-handed alpha
Helix 16	AB7	B	421	435	Right-handed alpha
Helix 17	AB8	B	437	447	Right-handed alpha
Helix 18	AB9	B	450	455	Right-handed alpha
Helix 19	AC1	B	456	465	Right-handed alpha
Helix 20	AC2	B	471	483	Right-handed alpha
Helix 21	AC3	B	502	512	Right-handed alpha
Helix 22	AC4	B	558	569	Right-handed alpha
Helix 23	AC5	B	571	582	Right-handed alpha
Helix 24	AC6	B	584	601	Right-handed alpha
Helix 25	AC7	B	605	634	Right-handed alpha
Helix 26	AC8	B	634	644	Right-handed alpha
Helix 27	AC9	B	646	650	Right-handed 310
Helix 28	AD1	B	653	662	Right-handed alpha
Helix 29	AD2	B	663	668	Right-handed alpha
Helix 30	AD3	B	669	682	Right-handed alpha
Helix 31	AD4	B	689	699	Right-handed alpha
Helix 32	AD5	B	700	705	Right-handed 310
Helix 33	AD6	B	766	777	Right-handed alpha
Helix 34	AD7	B	778	803	Right-handed alpha
Helix 35	AD8	B	811	834	Right-handed alpha
Helix 36	AD9	B	851	861	Right-handed alpha
Helix 37	AE1	B	862	884	Right-handed alpha
Helix 38	AE2	B	887	905	Right-handed alpha
Helix 39	AE3	B	906	913	Right-handed 310
Helix 40	AE4	B	916	953	Right-handed alpha
Helix 41	AE5	B	958	967	Right-handed alpha
Helix 42	AE6	B	967	974	Right-handed alpha
Helix 43	AE7	B	979	983	Right-handed 310
Helix 44	AE8	B	984	988	Right-handed 310
Helix 45	AE9	B	1016	1031	Right-handed alpha
Helix 46	AF1	B	1033	1053	Right-handed alpha
Helix 47	AF2	B	1053	1071	Right-handed alpha
Helix 48	AF3	B	1079	1093	Right-handed alpha
Helix 49	AF4	B	1113	1142	Right-handed alpha
Helix 50	AF5	B	1143	1166	Right-handed alpha
Helix 51	AF6	A	10	15	Right-handed alpha
Helix 52	AF7	A	98	109	Right-handed alpha
Helix 53	AF8	A	131	140	Right-handed alpha
Helix 54	AF9	A	141	150	Right-handed alpha
Helix 55	AG1	A	160	176	Right-handed alpha
Helix 56	AG2	A	196	201	Right-handed 310
Helix 57	AG3	A	246	259	Right-handed alpha
Helix 58	AG4	A	281	294	Right-handed alpha
Helix 59	AG5	A	305	316	Right-handed alpha
Helix 60	AG6	A	331	339	Right-handed alpha
Helix 61	AG7	A	343	356	Right-handed alpha
Helix 62	AG8	A	357	359	Right-handed 310
Helix 63	AG9	A	373	384	Right-handed alpha
Helix 64	AH1	A	393	404	Right-handed alpha
Helix 65	AH2	A	405	413	Right-handed alpha
Helix 66	AH3	A	421	435	Right-handed alpha
Helix 67	AH4	A	437	447	Right-handed alpha
Helix 68	AH5	A	450	455	Right-handed alpha
Helix 69	AH6	A	456	465	Right-handed alpha
Helix 70	AH7	A	471	483	Right-handed alpha
Helix 71	AH8	A	502	512	Right-handed alpha
Helix 72	AH9	A	558	569	Right-handed alpha
Helix 73	AI1	A	571	582	Right-handed alpha
Helix 74	AI2	A	584	601	Right-handed alpha
Helix 75	AI3	A	605	634	Right-handed alpha
Helix 76	AI4	A	634	644	Right-handed alpha
Helix 77	AI5	A	646	650	Right-handed 310
Helix 78	AI6	A	653	662	Right-handed alpha
Helix 79	AI7	A	663	668	Right-handed alpha
Helix 80	AI8	A	669	682	Right-handed alpha
Helix 81	AI9	A	689	699	Right-handed alpha
Helix 82	AJ1	A	700	705	Right-handed 310
Helix 83	AJ2	A	766	777	Right-handed alpha
Helix 84	AJ3	A	778	803	Right-handed alpha
Helix 85	AJ4	A	811	834	Right-handed alpha
Helix 86	AJ5	A	851	861	Right-handed alpha
Helix 87	AJ6	A	862	884	Right-handed alpha
Helix 88	AJ7	A	887	905	Right-handed alpha
Helix 89	AJ8	A	906	913	Right-handed 310
Helix 90	AJ9	A	916	953	Right-handed alpha
Helix 91	AK1	A	958	967	Right-handed alpha
Helix 92	AK2	A	967	974	Right-handed alpha
Helix 93	AK3	A	979	983	Right-handed 310
Helix 94	AK4	A	984	988	Right-handed 310
Helix 95	AK5	A	1016	1031	Right-handed alpha
Helix 96	AK6	A	1033	1053	Right-handed alpha
Helix 97	AK7	A	1053	1071	Right-handed alpha
Helix 98	AK8	A	1079	1093	Right-handed alpha
Helix 99	AK9	A	1113	1142	Right-handed alpha
Helix 100	AL1	A	1143	1166	Right-handed alpha
Helix 101	AL2	C	10	15	Right-handed alpha
Helix 102	AL3	C	98	109	Right-handed alpha
Helix 103	AL4	C	131	140	Right-handed alpha
Helix 104	AL5	C	141	150	Right-handed alpha
Helix 105	AL6	C	160	176	Right-handed alpha
Helix 106	AL7	C	196	201	Right-handed 310
Helix 107	AL8	C	246	259	Right-handed alpha
Helix 108	AL9	C	281	294	Right-handed alpha
Helix 109	AM1	C	305	316	Right-handed alpha
Helix 110	AM2	C	331	339	Right-handed alpha
Helix 111	AM3	C	343	356	Right-handed alpha
Helix 112	AM4	C	357	359	Right-handed 310
Helix 113	AM5	C	373	384	Right-handed alpha
Helix 114	AM6	C	393	404	Right-handed alpha
Helix 115	AM7	C	405	413	Right-handed alpha
Helix 116	AM8	C	421	435	Right-handed alpha
Helix 117	AM9	C	437	447	Right-handed alpha
Helix 118	AN1	C	450	455	Right-handed alpha
Helix 119	AN2	C	456	465	Right-handed alpha
Helix 120	AN3	C	471	483	Right-handed alpha
Helix 121	AN4	C	502	512	Right-handed alpha
Helix 122	AN5	C	558	569	Right-handed alpha
Helix 123	AN6	C	571	582	Right-handed alpha
Helix 124	AN7	C	584	601	Right-handed alpha
Helix 125	AN8	C	605	634	Right-handed alpha
Helix 126	AN9	C	634	644	Right-handed alpha
Helix 127	AO1	C	646	650	Right-handed 310
Helix 128	AO2	C	653	662	Right-handed alpha
Helix 129	AO3	C	663	668	Right-handed alpha
Helix 130	AO4	C	669	682	Right-handed alpha
Helix 131	AO5	C	689	699	Right-handed alpha
Helix 132	AO6	C	700	705	Right-handed 310
Helix 133	AO7	C	766	777	Right-handed alpha
Helix 134	AO8	C	778	803	Right-handed alpha
Helix 135	AO9	C	811	834	Right-handed alpha
Helix 136	AP1	C	851	861	Right-handed alpha
Helix 137	AP2	C	862	884	Right-handed alpha
Helix 138	AP3	C	887	905	Right-handed alpha
Helix 139	AP4	C	906	913	Right-handed 310
Helix 140	AP5	C	916	953	Right-handed alpha
Helix 141	AP6	C	958	967	Right-handed alpha
Helix 142	AP7	C	967	974	Right-handed alpha
Helix 143	AP8	C	979	983	Right-handed 310
Helix 144	AP9	C	984	988	Right-handed 310
Helix 145	AQ1	C	1016	1031	Right-handed alpha
Helix 146	AQ2	C	1033	1053	Right-handed alpha
Helix 147	AQ3	C	1053	1071	Right-handed alpha
Helix 148	AQ4	C	1079	1093	Right-handed alpha
Helix 149	AQ5	C	1113	1142	Right-handed alpha
Helix 150	AQ6	C	1143	1166	Right-handed alpha
Helix 151	AQ7	D	10	15	Right-handed alpha
Helix 152	AQ8	D	98	109	Right-handed alpha
Helix 153	AQ9	D	131	140	Right-handed alpha
Helix 154	AR1	D	141	150	Right-handed alpha
Helix 155	AR2	D	160	176	Right-handed alpha
Helix 156	AR3	D	196	201	Right-handed 310
Helix 157	AR4	D	246	259	Right-handed alpha
Helix 158	AR5	D	281	294	Right-handed alpha
Helix 159	AR6	D	305	316	Right-handed alpha
Helix 160	AR7	D	331	339	Right-handed alpha
Helix 161	AR8	D	343	356	Right-handed alpha
Helix 162	AR9	D	357	359	Right-handed 310
Helix 163	AS1	D	373	384	Right-handed alpha
Helix 164	AS2	D	393	404	Right-handed alpha
Helix 165	AS3	D	405	413	Right-handed alpha
Helix 166	AS4	D	421	435	Right-handed alpha
Helix 167	AS5	D	437	447	Right-handed alpha
Helix 168	AS6	D	450	455	Right-handed alpha
Helix 169	AS7	D	456	465	Right-handed alpha
Helix 170	AS8	D	471	483	Right-handed alpha
Helix 171	AS9	D	502	512	Right-handed alpha
Helix 172	AT1	D	558	569	Right-handed alpha
Helix 173	AT2	D	571	582	Right-handed alpha
Helix 174	AT3	D	584	601	Right-handed alpha
Helix 175	AT4	D	605	634	Right-handed alpha
Helix 176	AT5	D	634	644	Right-handed alpha
Helix 177	AT6	D	646	650	Right-handed 310
Helix 178	AT7	D	653	662	Right-handed alpha
Helix 179	AT8	D	663	668	Right-handed alpha
Helix 180	AT9	D	669	682	Right-handed alpha
Helix 181	AU1	D	689	699	Right-handed alpha
Helix 182	AU2	D	700	705	Right-handed 310
Helix 183	AU3	D	766	777	Right-handed alpha
Helix 184	AU4	D	778	803	Right-handed alpha
Helix 185	AU5	D	811	834	Right-handed alpha
Helix 186	AU6	D	851	861	Right-handed alpha
Helix 187	AU7	D	862	884	Right-handed alpha
Helix 188	AU8	D	887	905	Right-handed alpha
Helix 189	AU9	D	906	913	Right-handed 310
Helix 190	AV1	D	916	953	Right-handed alpha
Helix 191	AV2	D	958	967	Right-handed alpha
Helix 192	AV3	D	967	974	Right-handed alpha
Helix 193	AV4	D	979	983	Right-handed 310
Helix 194	AV5	D	984	988	Right-handed 310
Helix 195	AV6	D	1016	1031	Right-handed alpha
Helix 196	AV7	D	1033	1053	Right-handed alpha
Helix 197	AV8	D	1053	1071	Right-handed alpha
Helix 198	AV9	D	1079	1093	Right-handed alpha
Helix 199	AW1	D	1113	1142	Right-handed alpha
Helix 200	AW2	D	1143	1166	Right-handed alpha

There are 12 sheets in PDB entry 9MRT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	B	70	71	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	211	first strand
Strand 2	B	75	80	parallel
Strand 3	B	88	94	anti-parallel
Strand 4	B	231	236	parallel
Strand 5	B	183	190	parallel
Strand 6	B	151	155	parallel
Strand 7	B	117	122	parallel
Strand 8	B	273	277	parallel
Strand 9	B	298	301	parallel
Strand 10	B	361	364	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	989	990	first strand
Strand 2	B	1000	1002	anti-parallel
Strand 3	B	1012	1013	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	17	first strand
Strand 2	A	70	71	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	211	first strand
Strand 2	A	75	80	parallel
Strand 3	A	88	94	anti-parallel
Strand 4	A	231	236	parallel
Strand 5	A	183	190	parallel
Strand 6	A	151	155	parallel
Strand 7	A	117	122	parallel
Strand 8	A	273	277	parallel
Strand 9	A	298	301	parallel
Strand 10	A	361	364	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	989	990	first strand
Strand 2	A	1000	1002	anti-parallel
Strand 3	A	1012	1013	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	17	first strand
Strand 2	C	70	71	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	211	first strand
Strand 2	C	75	80	parallel
Strand 3	C	88	94	anti-parallel
Strand 4	C	231	236	parallel
Strand 5	C	183	190	parallel
Strand 6	C	151	155	parallel
Strand 7	C	117	122	parallel
Strand 8	C	273	277	parallel
Strand 9	C	298	301	parallel
Strand 10	C	361	364	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	989	990	first strand
Strand 2	C	1000	1002	anti-parallel
Strand 3	C	1012	1013	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	17	first strand
Strand 2	D	70	71	anti-parallel

Back to list of sheets
Back to top of page

There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	211	first strand
Strand 2	D	75	80	parallel
Strand 3	D	88	94	anti-parallel
Strand 4	D	231	236	parallel
Strand 5	D	183	190	parallel
Strand 6	D	151	155	parallel
Strand 7	D	117	122	parallel
Strand 8	D	273	277	parallel
Strand 9	D	298	301	parallel
Strand 10	D	361	364	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	989	990	first strand
Strand 2	D	1000	1002	anti-parallel
Strand 3	D	1012	1013	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MRT

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MRT