Analysis of interatomic Contacts of Structural Units in PDB entry:
9MS0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MS0 entry

There are 4 chains in PDB entry 9MS0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 0	PRO 270
B	MET 0	ASP 98
C	GLN 2	PRO 198
D	ASN 1	ARG 240

There are 11 helices in PDB entry 9MS0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	52	Right-handed alpha
Helix 2	AA2	A	55	85	Right-handed alpha
Helix 3	AA3	A	133	146	Right-handed alpha
Helix 4	AA4	A	146	159	Right-handed alpha
Helix 5	AA5	A	159	172	Right-handed alpha
Helix 6	AA6	A	172	177	Right-handed alpha
Helix 7	AA7	C	79	83	Right-handed 310
Helix 8	AA8	D	82	86	Right-handed 310
Helix 9	AA9	D	114	118	Right-handed 310
Helix 10	AB1	D	129	137	Right-handed alpha
Helix 11	AB2	D	196	201	Right-handed alpha

There are 15 sheets in PDB entry 9MS0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	31	37	anti-parallel
Strand 3	A	22	28	anti-parallel
Strand 4	A	3	12	anti-parallel
Strand 5	A	91	100	anti-parallel
Strand 6	A	106	114	anti-parallel
Strand 7	A	117	123	anti-parallel
Strand 8	A	128	131	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	188	first strand
Strand 2	A	198	205	anti-parallel
Strand 3	A	238	244	anti-parallel
Strand 4	A	225	232	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	221	first strand
Strand 2	A	211	216	anti-parallel
Strand 3	A	254	260	anti-parallel
Strand 4	A	263	268	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	50	51	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	55	56	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	36	41	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	5	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	70	75	anti-parallel
Strand 4	C	60	65	anti-parallel
Strand 5	C	53	57	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	103	108	parallel
Strand 3	C	84	91	anti-parallel
Strand 4	C	32	37	anti-parallel
Strand 5	C	44	49	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	103	108	parallel
Strand 3	C	84	91	anti-parallel
Strand 4	C	97	99	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	153	first strand
Strand 2	C	166	175	anti-parallel
Strand 3	C	130	135	anti-parallel
Strand 4	C	117	123	anti-parallel
Strand 5	D	122	127	anti-parallel
Strand 6	D	138	148	anti-parallel
Strand 7	D	186	195	anti-parallel
Strand 8	D	168	170	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	161	first strand
Strand 2	C	166	175	anti-parallel
Strand 3	C	130	135	anti-parallel
Strand 4	C	117	123	anti-parallel
Strand 5	D	122	127	anti-parallel
Strand 6	D	138	148	anti-parallel
Strand 7	D	186	195	anti-parallel
Strand 8	D	175	176	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	73	78	anti-parallel
Strand 4	D	65	67	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	107	112	parallel
Strand 3	D	87	94	anti-parallel
Strand 4	D	31	37	anti-parallel
Strand 5	D	44	49	anti-parallel
Strand 6	D	56	57	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	107	112	parallel
Strand 3	D	87	94	anti-parallel
Strand 4	D	102	103	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	162	164	first strand
Strand 2	D	153	159	anti-parallel
Strand 3	D	205	212	anti-parallel
Strand 4	D	231	238	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MS0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MS0