Analysis of interatomic Contacts of Structural Units in PDB entry:
9MS8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MS8 entry

There are 3 chains in PDB entry 9MS8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 76SER 1176
L
 VAL 22LYS 123
H
 VAL 21SER 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9MS8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 96Right-handed alpha
Helix 2
AA2
A
99 116Right-handed alpha
Helix 3
AA3
A
124 129Right-handed alpha
Helix 4
AA4
A
134 146Right-handed alpha
Helix 5
AA5
A
171 187Right-handed alpha
Helix 6
AA6
A
215 224Right-handed alpha
Helix 7
AA7
A
230 235Right-handed 310
Helix 8
AA8
A
260 271Right-handed alpha
Helix 9
AA9
A
275 285Right-handed alpha
Helix 10
AB1
A
338 342Right-handed alpha
Helix 11
AB2
A
368 377Right-handed alpha
Helix 12
AB3
A
388 411Right-handed alpha
Helix 13
AB4
A
423 436Right-handed alpha
Helix 14
AB5
A
438 457Right-handed alpha
Helix 15
AB6
A
469 491Right-handed alpha
Helix 16
AB7
A
502 528Right-handed alpha
Helix 17
AB8
A
535 563Right-handed alpha
Helix 18
AB9
A
567 602Right-handed alpha
Helix 19
AC1
A
733 746Right-handed alpha
Helix 20
AC2
A
746 770Right-handed alpha
Helix 21
AC3
A
776 780Right-handed 310
Helix 22
AC4
A
785 798Right-handed alpha
Helix 23
AC5
A
816 825Right-handed alpha
Helix 24
AC6
A
826 829Right-handed 310
Helix 25
AC7
A
843 866Right-handed alpha
Helix 26
AC8
A
871 875Right-handed 310
Helix 27
AC9
A
877 889Right-handed alpha
Helix 28
AD1
A
897 901Right-handed 310
Helix 29
AD2
A
915 917Right-handed 310
Helix 30
AD3
A
918 930Right-handed alpha
Helix 31
AD4
A
930 938Right-handed alpha
Helix 32
AD5
A
956 960Right-handed 310
Helix 33
AD6
A
985 1005Right-handed alpha
Helix 34
AD7
A
1012 1018Right-handed alpha
Helix 35
AD8
A
1019 1022Right-handed 310
Helix 36
AD9
A
1023 1048Right-handed alpha
Helix 37
AE1
A
1049 1075Right-handed alpha
Helix 38
AE2
A
1079 1105Right-handed alpha
Helix 39
AE3
A
1112 1122Right-handed alpha
Helix 40
AE4
A
1123 1139Right-handed alpha
Helix 41
AE5
A
1140 1143Right-handed 310
Helix 42
AE6
A
1145 1170Right-handed alpha
Helix 43
AE7
A
1170 1176Right-handed alpha
Helix 44
AE8
L
49 51Right-handed 310
Helix 45
AE9
L
99 103Right-handed 310
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There are 6 sheets in PDB entry 9MS8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
359 361anti-parallel
Strand 3
A
158 162anti-parallel
Strand 4
A
417 421anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
800 807first strand
Strand 2
A
972 979anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
23 24first strand
Strand 2
L
38 44anti-parallel
Strand 3
L
90 95anti-parallel
Strand 4
L
85 87anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
65 69first strand
Strand 2
L
53 58anti-parallel
Strand 3
L
105 110anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
24 26first strand
Strand 2
H
36 42anti-parallel
Strand 3
H
97 103anti-parallel
Strand 4
H
87 92anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
77 79first strand
Strand 2
H
64 70anti-parallel
Strand 3
H
53 58anti-parallel
Strand 4
H
112 114anti-parallel
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