Analysis of interatomic Contacts of Structural Units in PDB entry:
9MSY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MSY entry

There are 15 chains in PDB entry 9MSY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 34	ASP 659
G	VAL 2	THR 110
I	GLU 3	LEU 106
L	GLU 1	GLU 105
H	VAL 2	THR 110
B	LEU 34	ASP 659
J	VAL 2	THR 110
M	GLU 3	LEU 106
N	GLU 1	GLU 105
K	VAL 2	THR 110
C	LEU 34	ASP 659
O	VAL 2	THR 110
Q	GLU 3	LEU 106
R	GLU 1	GLU 105
P	VAL 2	THR 110

There are 51 helices in PDB entry 9MSY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	99	116	Right-handed alpha
Helix 2	AA2	A	336	352	Right-handed alpha
Helix 3	AA3	A	368	373	Right-handed alpha
Helix 4	AA4	A	476	481	Right-handed alpha
Helix 5	AA5	A	544	549	Right-handed 310
Helix 6	AA6	A	573	596	Right-handed alpha
Helix 7	AA7	A	618	624	Right-handed alpha
Helix 8	AA8	A	627	635	Right-handed alpha
Helix 9	AA9	A	636	639	Right-handed 310
Helix 10	AB1	A	641	659	Right-handed alpha
Helix 11	AB2	G	29	31	Right-handed 310
Helix 12	AB3	G	100	100	Right-handed 310
Helix 13	AB4	I	26	30	Right-handed 310
Helix 14	AB5	I	79	83	Right-handed 310
Helix 15	AB6	L	29	32	Right-handed 310
Helix 16	AB7	L	79	83	Right-handed 310
Helix 17	AB8	H	83	87	Right-handed 310
Helix 18	AB9	B	99	116	Right-handed alpha
Helix 19	AC1	B	336	352	Right-handed alpha
Helix 20	AC2	B	368	373	Right-handed alpha
Helix 21	AC3	B	476	481	Right-handed alpha
Helix 22	AC4	B	544	549	Right-handed 310
Helix 23	AC5	B	573	596	Right-handed alpha
Helix 24	AC6	B	618	624	Right-handed alpha
Helix 25	AC7	B	627	635	Right-handed alpha
Helix 26	AC8	B	636	639	Right-handed 310
Helix 27	AC9	B	641	659	Right-handed alpha
Helix 28	AD1	J	29	31	Right-handed 310
Helix 29	AD2	J	100	100	Right-handed 310
Helix 30	AD3	M	26	30	Right-handed 310
Helix 31	AD4	M	79	83	Right-handed 310
Helix 32	AD5	N	29	32	Right-handed 310
Helix 33	AD6	N	79	83	Right-handed 310
Helix 34	AD7	K	83	87	Right-handed 310
Helix 35	AD8	C	99	116	Right-handed alpha
Helix 36	AD9	C	336	352	Right-handed alpha
Helix 37	AE1	C	368	373	Right-handed alpha
Helix 38	AE2	C	476	481	Right-handed alpha
Helix 39	AE3	C	544	549	Right-handed 310
Helix 40	AE4	C	573	596	Right-handed alpha
Helix 41	AE5	C	618	624	Right-handed alpha
Helix 42	AE6	C	627	635	Right-handed alpha
Helix 43	AE7	C	636	639	Right-handed 310
Helix 44	AE8	C	641	659	Right-handed alpha
Helix 45	AE9	O	29	31	Right-handed 310
Helix 46	AF1	O	100	100	Right-handed 310
Helix 47	AF2	Q	26	30	Right-handed 310
Helix 48	AF3	Q	79	83	Right-handed 310
Helix 49	AF4	R	29	32	Right-handed 310
Helix 50	AF5	R	79	83	Right-handed 310
Helix 51	AF6	P	83	87	Right-handed 310

There are 54 sheets in PDB entry 9MSY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	499	first strand
Strand 2	A	35	39	anti-parallel
Strand 3	A	603	609	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	83	86	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	217	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	236	238	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	177	first strand
Strand 2	A	154	162	anti-parallel
Strand 3	A	129	133	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	308	anti-parallel
Strand 3	A	441	456	anti-parallel
Strand 4	A	465	470	anti-parallel
Strand 5	A	357	361	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	323	first strand
Strand 2	A	284	308	anti-parallel
Strand 3	A	330	333	anti-parallel
Strand 4	A	416	421	anti-parallel
Strand 5	A	382	385	anti-parallel
Strand 6	A	374	375	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	7	first strand
Strand 2	G	16	25	anti-parallel
Strand 3	G	77	82	anti-parallel
Strand 4	G	67	69	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	59	first strand
Strand 2	G	46	51	anti-parallel
Strand 3	G	33	39	anti-parallel
Strand 4	G	88	99	anti-parallel
Strand 5	G	100	103	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	57	59	first strand
Strand 2	G	46	51	anti-parallel
Strand 3	G	33	39	anti-parallel
Strand 4	G	88	99	anti-parallel
Strand 5	G	107	109	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	13	first strand
Strand 2	I	102	106	parallel
Strand 3	I	85	90	anti-parallel
Strand 4	I	34	38	anti-parallel
Strand 5	I	45	48	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	9	13	first strand
Strand 2	I	102	106	parallel
Strand 3	I	85	90	anti-parallel
Strand 4	I	97	98	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	24	first strand
Strand 2	I	70	75	anti-parallel
Strand 3	I	62	67	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	23	first strand
Strand 2	L	71	75	anti-parallel
Strand 3	L	62	65	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	49	anti-parallel
Strand 3	L	34	38	anti-parallel
Strand 4	L	85	89	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	67	68	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	82	anti-parallel
Strand 4	H	71	72	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	57	59	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	35	39	anti-parallel
Strand 4	H	89	93	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	499	first strand
Strand 2	B	35	39	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	47	first strand
Strand 2	B	486	491	anti-parallel
Strand 3	B	223	228	anti-parallel
Strand 4	B	242	245	anti-parallel
Strand 5	B	83	86	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	217	218	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	94	first strand
Strand 2	B	236	238	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	177	first strand
Strand 2	B	154	162	anti-parallel
Strand 3	B	129	133	anti-parallel
Strand 4	B	190	193	anti-parallel
Strand 5	B	181	183	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	273	first strand
Strand 2	B	284	308	anti-parallel
Strand 3	B	441	456	anti-parallel
Strand 4	B	465	470	anti-parallel
Strand 5	B	357	361	parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	323	first strand
Strand 2	B	284	308	anti-parallel
Strand 3	B	330	333	anti-parallel
Strand 4	B	416	421	anti-parallel
Strand 5	B	382	385	anti-parallel
Strand 6	B	374	375	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	16	25	anti-parallel
Strand 3	J	77	82	anti-parallel
Strand 4	J	67	69	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	57	59	first strand
Strand 2	J	46	51	anti-parallel
Strand 3	J	33	39	anti-parallel
Strand 4	J	88	99	anti-parallel
Strand 5	J	100	103	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	57	59	first strand
Strand 2	J	46	51	anti-parallel
Strand 3	J	33	39	anti-parallel
Strand 4	J	88	99	anti-parallel
Strand 5	J	107	109	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	9	13	first strand
Strand 2	M	102	106	parallel
Strand 3	M	85	90	anti-parallel
Strand 4	M	34	38	anti-parallel
Strand 5	M	45	48	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	9	13	first strand
Strand 2	M	102	106	parallel
Strand 3	M	85	90	anti-parallel
Strand 4	M	97	98	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	19	24	first strand
Strand 2	M	70	75	anti-parallel
Strand 3	M	62	67	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	19	23	first strand
Strand 2	N	71	75	anti-parallel
Strand 3	N	62	65	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	53	54	first strand
Strand 2	N	45	49	anti-parallel
Strand 3	N	34	38	anti-parallel
Strand 4	N	85	89	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	17	25	anti-parallel
Strand 3	K	77	82	anti-parallel
Strand 4	K	67	68	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	17	25	anti-parallel
Strand 3	K	77	82	anti-parallel
Strand 4	K	71	72	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	57	59	first strand
Strand 2	K	45	51	anti-parallel
Strand 3	K	35	39	anti-parallel
Strand 4	K	89	94	anti-parallel
Strand 5	K	102	103	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	497	499	first strand
Strand 2	C	35	39	anti-parallel
Strand 3	C	603	609	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	486	491	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	83	86	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	217	218	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	236	238	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	177	first strand
Strand 2	C	154	162	anti-parallel
Strand 3	C	129	133	anti-parallel
Strand 4	C	190	193	anti-parallel
Strand 5	C	181	183	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	284	308	anti-parallel
Strand 3	C	441	456	anti-parallel
Strand 4	C	465	470	anti-parallel
Strand 5	C	357	361	parallel

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There are 6 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	316	323	first strand
Strand 2	C	284	308	anti-parallel
Strand 3	C	330	333	anti-parallel
Strand 4	C	416	421	anti-parallel
Strand 5	C	382	385	anti-parallel
Strand 6	C	374	375	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	3	7	first strand
Strand 2	O	16	25	anti-parallel
Strand 3	O	77	82	anti-parallel
Strand 4	O	67	69	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	57	59	first strand
Strand 2	O	46	51	anti-parallel
Strand 3	O	33	39	anti-parallel
Strand 4	O	88	99	anti-parallel
Strand 5	O	100	103	anti-parallel

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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	57	59	first strand
Strand 2	O	46	51	anti-parallel
Strand 3	O	33	39	anti-parallel
Strand 4	O	88	99	anti-parallel
Strand 5	O	107	109	anti-parallel

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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	9	13	first strand
Strand 2	Q	102	106	parallel
Strand 3	Q	85	90	anti-parallel
Strand 4	Q	34	38	anti-parallel
Strand 5	Q	45	48	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	9	13	first strand
Strand 2	Q	102	106	parallel
Strand 3	Q	85	90	anti-parallel
Strand 4	Q	97	98	anti-parallel

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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	19	24	first strand
Strand 2	Q	70	75	anti-parallel
Strand 3	Q	62	67	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	19	23	first strand
Strand 2	R	71	75	anti-parallel
Strand 3	R	62	65	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	53	54	first strand
Strand 2	R	45	49	anti-parallel
Strand 3	R	34	38	anti-parallel
Strand 4	R	85	89	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	3	6	first strand
Strand 2	P	17	25	anti-parallel
Strand 3	P	77	82	anti-parallel
Strand 4	P	67	68	anti-parallel

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There are 4 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	3	6	first strand
Strand 2	P	17	25	anti-parallel
Strand 3	P	77	82	anti-parallel
Strand 4	P	71	72	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	57	59	first strand
Strand 2	P	45	51	anti-parallel
Strand 3	P	35	39	anti-parallel
Strand 4	P	89	93	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MSY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MSY