Analysis of interatomic Contacts of Structural Units in PDB entry:
9MT5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MT5 entry

There are 2 chains in PDB entry 9MT5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2PRO 144
B
 MET 1GLU 450
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 17 helices in PDB entry 9MT5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 12Right-handed 310
Helix 2
AA2
A
70 83Right-handed alpha
Helix 3
AA3
B
43 51Right-handed alpha
Helix 4
AA4
B
55 65Right-handed alpha
Helix 5
AA5
B
122 135Right-handed alpha
Helix 6
AA6
B
138 140Right-handed 310
Helix 7
AA7
B
184 194Right-handed alpha
Helix 8
AA8
B
208 220Right-handed alpha
Helix 9
AA9
B
232 237Right-handed 310
Helix 10
AB1
B
246 254Right-handed alpha
Helix 11
AB2
B
265 269Right-handed 310
Helix 12
AB3
B
271 281Right-handed alpha
Helix 13
AB4
B
311 321Right-handed alpha
Helix 14
AB5
B
345 368Right-handed alpha
Helix 15
AB6
B
378 399Right-handed alpha
Helix 16
AB7
B
411 415Right-handed 310
Helix 17
AB8
B
416 423Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 9MT5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
13 16anti-parallel
Strand 3
A
93 98anti-parallel
Strand 4
A
106 115anti-parallel
Strand 5
A
128 139anti-parallel
Strand 6
A
59 65anti-parallel
Strand 7
A
30 34anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 43first strand
Strand 2
A
49 53anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
70 71parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 41first strand
Strand 2
B
74 78anti-parallel
Strand 3
B
25 29parallel
Strand 4
B
201 204parallel
Strand 5
B
225 230parallel
Strand 6
B
259 263parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 145first strand
Strand 2
B
155 159anti-parallel
Strand 3
B
81 86anti-parallel
Strand 4
B
176 181anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 110first strand
Strand 2
B
100 103anti-parallel
Strand 3
B
166 169anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 328first strand
Strand 2
B
333 335anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 408first strand
Strand 2
B
429 434anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il