Analysis of interatomic Contacts of Structural Units in PDB entry:
9MUB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MUB entry

There are 4 chains in PDB entry 9MUB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 16	PHE 514
B	ASP 16	PHE 514
C	ASP 16	PHE 514
D	ASP 16	PHE 514

There are 60 helices in PDB entry 9MUB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	25	Right-handed alpha
Helix 2	AA2	A	31	33	Right-handed 310
Helix 3	AA3	A	45	49	Right-handed 310
Helix 4	AA4	A	75	85	Right-handed alpha
Helix 5	AA5	A	96	110	Right-handed alpha
Helix 6	AA6	A	254	266	Right-handed alpha
Helix 7	AA7	A	280	294	Right-handed alpha
Helix 8	AA8	A	306	316	Right-handed alpha
Helix 9	AA9	A	332	338	Right-handed alpha
Helix 10	AB1	A	342	355	Right-handed alpha
Helix 11	AB2	A	356	358	Right-handed 310
Helix 12	AB3	A	369	379	Right-handed alpha
Helix 13	AB4	A	452	471	Right-handed alpha
Helix 14	AB5	A	475	485	Right-handed alpha
Helix 15	AB6	A	494	502	Right-handed alpha
Helix 16	AB7	B	19	25	Right-handed alpha
Helix 17	AB8	B	31	33	Right-handed 310
Helix 18	AB9	B	45	49	Right-handed 310
Helix 19	AC1	B	75	85	Right-handed alpha
Helix 20	AC2	B	96	110	Right-handed alpha
Helix 21	AC3	B	254	266	Right-handed alpha
Helix 22	AC4	B	280	294	Right-handed alpha
Helix 23	AC5	B	306	316	Right-handed alpha
Helix 24	AC6	B	332	338	Right-handed alpha
Helix 25	AC7	B	342	355	Right-handed alpha
Helix 26	AC8	B	356	358	Right-handed 310
Helix 27	AC9	B	369	379	Right-handed alpha
Helix 28	AD1	B	452	471	Right-handed alpha
Helix 29	AD2	B	475	485	Right-handed alpha
Helix 30	AD3	B	494	502	Right-handed alpha
Helix 31	AD4	C	19	25	Right-handed alpha
Helix 32	AD5	C	31	33	Right-handed 310
Helix 33	AD6	C	45	49	Right-handed 310
Helix 34	AD7	C	75	85	Right-handed alpha
Helix 35	AD8	C	96	109	Right-handed alpha
Helix 36	AD9	C	254	266	Right-handed alpha
Helix 37	AE1	C	280	294	Right-handed alpha
Helix 38	AE2	C	306	316	Right-handed alpha
Helix 39	AE3	C	332	338	Right-handed alpha
Helix 40	AE4	C	342	355	Right-handed alpha
Helix 41	AE5	C	356	358	Right-handed 310
Helix 42	AE6	C	369	379	Right-handed alpha
Helix 43	AE7	C	452	471	Right-handed alpha
Helix 44	AE8	C	475	485	Right-handed alpha
Helix 45	AE9	C	494	502	Right-handed alpha
Helix 46	AF1	D	19	25	Right-handed alpha
Helix 47	AF2	D	31	33	Right-handed 310
Helix 48	AF3	D	45	49	Right-handed 310
Helix 49	AF4	D	75	85	Right-handed alpha
Helix 50	AF5	D	96	110	Right-handed alpha
Helix 51	AF6	D	254	266	Right-handed alpha
Helix 52	AF7	D	280	294	Right-handed alpha
Helix 53	AF8	D	306	316	Right-handed alpha
Helix 54	AF9	D	332	338	Right-handed alpha
Helix 55	AG1	D	342	355	Right-handed alpha
Helix 56	AG2	D	356	358	Right-handed 310
Helix 57	AG3	D	369	379	Right-handed alpha
Helix 58	AG4	D	452	471	Right-handed alpha
Helix 59	AG5	D	475	485	Right-handed alpha
Helix 60	AG6	D	494	502	Right-handed alpha

There are 16 sheets in PDB entry 9MUB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	37	first strand
Strand 2	A	490	492	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	60	61	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	67	first strand
Strand 2	A	88	91	parallel
Strand 3	A	247	250	parallel
Strand 4	A	270	273	parallel
Strand 5	A	298	304	parallel
Strand 6	A	320	323	parallel
Strand 7	A	361	364	parallel
Strand 8	A	383	386	parallel
Strand 9	A	65	67	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	400	403	first strand
Strand 2	A	406	412	anti-parallel
Strand 3	A	444	448	anti-parallel
Strand 4	D	508	510	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	510	first strand
Strand 2	B	444	448	anti-parallel
Strand 3	B	406	412	anti-parallel
Strand 4	B	400	403	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	37	first strand
Strand 2	B	490	492	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	60	61	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	88	91	parallel
Strand 3	B	247	250	parallel
Strand 4	B	270	273	parallel
Strand 5	B	298	304	parallel
Strand 6	B	320	323	parallel
Strand 7	B	361	364	parallel
Strand 8	B	383	386	parallel
Strand 9	B	65	67	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	510	first strand
Strand 2	C	444	448	anti-parallel
Strand 3	C	406	412	anti-parallel
Strand 4	C	401	403	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	37	first strand
Strand 2	C	490	492	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	60	61	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	67	first strand
Strand 2	C	88	91	parallel
Strand 3	C	247	250	parallel
Strand 4	C	270	273	parallel
Strand 5	C	298	304	parallel
Strand 6	C	320	323	parallel
Strand 7	C	361	364	parallel
Strand 8	C	383	386	parallel
Strand 9	C	65	67	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	508	510	first strand
Strand 2	D	444	448	anti-parallel
Strand 3	D	406	412	anti-parallel
Strand 4	D	400	403	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	37	first strand
Strand 2	D	490	492	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	54	first strand
Strand 2	D	60	61	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	67	first strand
Strand 2	D	88	91	parallel
Strand 3	D	247	250	parallel
Strand 4	D	270	273	parallel
Strand 5	D	298	304	parallel
Strand 6	D	320	323	parallel
Strand 7	D	361	364	parallel
Strand 8	D	383	386	parallel
Strand 9	D	65	67	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MUB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MUB