Analysis of interatomic Contacts of Structural Units in PDB entry:
9MUC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MUC entry

There are 8 chains in PDB entry 9MUC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PHE 514
B	MET 1	PHE 514
C	MET 1	PHE 514
D	MET 1	PHE 514
E	MET 1	PHE 514
F	MET 1	PHE 514
G	MET 1	PHE 514
H	MET 1	PHE 514

There are120 helices in PDB entry 9MUC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	6	Right-handed alpha
Helix 2	AA2	A	19	24	Right-handed alpha
Helix 3	AA3	A	31	33	Right-handed 310
Helix 4	AA4	A	45	49	Right-handed 310
Helix 5	AA5	A	75	86	Right-handed alpha
Helix 6	AA6	A	96	109	Right-handed alpha
Helix 7	AA7	A	255	266	Right-handed alpha
Helix 8	AA8	A	280	294	Right-handed alpha
Helix 9	AA9	A	306	317	Right-handed alpha
Helix 10	AB1	A	332	337	Right-handed alpha
Helix 11	AB2	A	342	356	Right-handed alpha
Helix 12	AB3	A	369	379	Right-handed alpha
Helix 13	AB4	A	452	472	Right-handed alpha
Helix 14	AB5	A	475	485	Right-handed alpha
Helix 15	AB6	A	494	502	Right-handed alpha
Helix 16	AB7	B	2	6	Right-handed alpha
Helix 17	AB8	B	19	24	Right-handed alpha
Helix 18	AB9	B	31	33	Right-handed 310
Helix 19	AC1	B	45	49	Right-handed 310
Helix 20	AC2	B	75	86	Right-handed alpha
Helix 21	AC3	B	96	109	Right-handed alpha
Helix 22	AC4	B	255	267	Right-handed alpha
Helix 23	AC5	B	280	294	Right-handed alpha
Helix 24	AC6	B	306	317	Right-handed alpha
Helix 25	AC7	B	332	337	Right-handed alpha
Helix 26	AC8	B	342	356	Right-handed alpha
Helix 27	AC9	B	369	379	Right-handed alpha
Helix 28	AD1	B	452	472	Right-handed alpha
Helix 29	AD2	B	475	485	Right-handed alpha
Helix 30	AD3	B	494	502	Right-handed alpha
Helix 31	AD4	C	2	6	Right-handed alpha
Helix 32	AD5	C	19	24	Right-handed alpha
Helix 33	AD6	C	31	33	Right-handed 310
Helix 34	AD7	C	45	49	Right-handed 310
Helix 35	AD8	C	75	86	Right-handed alpha
Helix 36	AD9	C	96	109	Right-handed alpha
Helix 37	AE1	C	255	266	Right-handed alpha
Helix 38	AE2	C	280	294	Right-handed alpha
Helix 39	AE3	C	306	317	Right-handed alpha
Helix 40	AE4	C	332	337	Right-handed alpha
Helix 41	AE5	C	342	356	Right-handed alpha
Helix 42	AE6	C	369	379	Right-handed alpha
Helix 43	AE7	C	452	472	Right-handed alpha
Helix 44	AE8	C	475	485	Right-handed alpha
Helix 45	AE9	C	494	502	Right-handed alpha
Helix 46	AF1	D	2	6	Right-handed alpha
Helix 47	AF2	D	19	24	Right-handed alpha
Helix 48	AF3	D	31	33	Right-handed 310
Helix 49	AF4	D	45	49	Right-handed 310
Helix 50	AF5	D	75	86	Right-handed alpha
Helix 51	AF6	D	96	109	Right-handed alpha
Helix 52	AF7	D	255	266	Right-handed alpha
Helix 53	AF8	D	280	294	Right-handed alpha
Helix 54	AF9	D	306	317	Right-handed alpha
Helix 55	AG1	D	332	337	Right-handed alpha
Helix 56	AG2	D	342	356	Right-handed alpha
Helix 57	AG3	D	369	379	Right-handed alpha
Helix 58	AG4	D	452	472	Right-handed alpha
Helix 59	AG5	D	475	485	Right-handed alpha
Helix 60	AG6	D	494	502	Right-handed alpha
Helix 61	AG7	E	2	6	Right-handed alpha
Helix 62	AG8	E	19	24	Right-handed alpha
Helix 63	AG9	E	31	33	Right-handed 310
Helix 64	AH1	E	45	49	Right-handed 310
Helix 65	AH2	E	75	86	Right-handed alpha
Helix 66	AH3	E	96	109	Right-handed alpha
Helix 67	AH4	E	255	266	Right-handed alpha
Helix 68	AH5	E	280	294	Right-handed alpha
Helix 69	AH6	E	306	317	Right-handed alpha
Helix 70	AH7	E	332	337	Right-handed alpha
Helix 71	AH8	E	342	356	Right-handed alpha
Helix 72	AH9	E	369	379	Right-handed alpha
Helix 73	AI1	E	452	472	Right-handed alpha
Helix 74	AI2	E	475	485	Right-handed alpha
Helix 75	AI3	E	494	502	Right-handed alpha
Helix 76	AI4	F	2	6	Right-handed alpha
Helix 77	AI5	F	19	24	Right-handed alpha
Helix 78	AI6	F	31	33	Right-handed 310
Helix 79	AI7	F	45	49	Right-handed 310
Helix 80	AI8	F	75	86	Right-handed alpha
Helix 81	AI9	F	96	109	Right-handed alpha
Helix 82	AJ1	F	255	266	Right-handed alpha
Helix 83	AJ2	F	280	294	Right-handed alpha
Helix 84	AJ3	F	306	317	Right-handed alpha
Helix 85	AJ4	F	332	337	Right-handed alpha
Helix 86	AJ5	F	342	356	Right-handed alpha
Helix 87	AJ6	F	369	379	Right-handed alpha
Helix 88	AJ7	F	452	472	Right-handed alpha
Helix 89	AJ8	F	475	485	Right-handed alpha
Helix 90	AJ9	F	494	502	Right-handed alpha
Helix 91	AK1	G	2	6	Right-handed alpha
Helix 92	AK2	G	19	24	Right-handed alpha
Helix 93	AK3	G	31	33	Right-handed 310
Helix 94	AK4	G	45	49	Right-handed 310
Helix 95	AK5	G	75	86	Right-handed alpha
Helix 96	AK6	G	96	109	Right-handed alpha
Helix 97	AK7	G	255	266	Right-handed alpha
Helix 98	AK8	G	280	294	Right-handed alpha
Helix 99	AK9	G	306	317	Right-handed alpha
Helix 100	AL1	G	332	337	Right-handed alpha
Helix 101	AL2	G	342	356	Right-handed alpha
Helix 102	AL3	G	369	379	Right-handed alpha
Helix 103	AL4	G	452	472	Right-handed alpha
Helix 104	AL5	G	475	485	Right-handed alpha
Helix 105	AL6	G	494	502	Right-handed alpha
Helix 106	AL7	H	2	6	Right-handed alpha
Helix 107	AL8	H	19	24	Right-handed alpha
Helix 108	AL9	H	31	33	Right-handed 310
Helix 109	AM1	H	45	49	Right-handed 310
Helix 110	AM2	H	75	86	Right-handed alpha
Helix 111	AM3	H	96	109	Right-handed alpha
Helix 112	AM4	H	255	266	Right-handed alpha
Helix 113	AM5	H	280	294	Right-handed alpha
Helix 114	AM6	H	306	317	Right-handed alpha
Helix 115	AM7	H	332	337	Right-handed alpha
Helix 116	AM8	H	342	356	Right-handed alpha
Helix 117	AM9	H	369	379	Right-handed alpha
Helix 118	AN1	H	452	472	Right-handed alpha
Helix 119	AN2	H	475	485	Right-handed alpha
Helix 120	AN3	H	494	502	Right-handed alpha

There are 32 sheets in PDB entry 9MUC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	37	first strand
Strand 2	A	490	492	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	60	61	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	67	first strand
Strand 2	A	88	91	parallel
Strand 3	A	247	250	parallel
Strand 4	A	270	273	parallel
Strand 5	A	298	304	parallel
Strand 6	A	320	323	parallel
Strand 7	A	361	364	parallel
Strand 8	A	383	386	parallel
Strand 9	A	65	67	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	403	first strand
Strand 2	A	406	412	anti-parallel
Strand 3	A	444	448	anti-parallel
Strand 4	D	508	510	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	508	510	first strand
Strand 2	B	444	448	anti-parallel
Strand 3	B	406	412	anti-parallel
Strand 4	B	401	403	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	37	first strand
Strand 2	B	490	492	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	56	first strand
Strand 2	B	59	61	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	67	first strand
Strand 2	B	88	91	parallel
Strand 3	B	247	250	parallel
Strand 4	B	270	273	parallel
Strand 5	B	298	304	parallel
Strand 6	B	320	323	parallel
Strand 7	B	361	364	parallel
Strand 8	B	383	386	parallel
Strand 9	B	65	67	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	508	510	first strand
Strand 2	C	444	448	anti-parallel
Strand 3	C	406	412	anti-parallel
Strand 4	C	401	403	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	37	first strand
Strand 2	C	490	492	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	56	first strand
Strand 2	C	59	61	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	67	first strand
Strand 2	C	88	91	parallel
Strand 3	C	247	250	parallel
Strand 4	C	270	273	parallel
Strand 5	C	298	304	parallel
Strand 6	C	320	323	parallel
Strand 7	C	361	364	parallel
Strand 8	C	383	386	parallel
Strand 9	C	65	67	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	508	510	first strand
Strand 2	D	444	448	anti-parallel
Strand 3	D	406	412	anti-parallel
Strand 4	D	401	403	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	37	first strand
Strand 2	D	490	492	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	59	61	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	65	67	first strand
Strand 2	D	88	91	parallel
Strand 3	D	247	250	parallel
Strand 4	D	270	273	parallel
Strand 5	D	298	304	parallel
Strand 6	D	320	323	parallel
Strand 7	D	361	364	parallel
Strand 8	D	383	386	parallel
Strand 9	D	65	67	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	37	first strand
Strand 2	E	490	492	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	56	first strand
Strand 2	E	59	61	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	67	first strand
Strand 2	E	88	91	parallel
Strand 3	E	247	250	parallel
Strand 4	E	270	273	parallel
Strand 5	E	298	304	parallel
Strand 6	E	320	323	parallel
Strand 7	E	361	364	parallel
Strand 8	E	383	386	parallel
Strand 9	E	65	67	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	401	403	first strand
Strand 2	E	406	412	anti-parallel
Strand 3	E	444	448	anti-parallel
Strand 4	H	508	510	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	508	510	first strand
Strand 2	F	444	448	anti-parallel
Strand 3	F	406	412	anti-parallel
Strand 4	F	401	403	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	37	first strand
Strand 2	F	490	492	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	54	first strand
Strand 2	F	60	61	anti-parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	65	67	first strand
Strand 2	F	88	91	parallel
Strand 3	F	247	250	parallel
Strand 4	F	270	273	parallel
Strand 5	F	298	304	parallel
Strand 6	F	320	323	parallel
Strand 7	F	361	364	parallel
Strand 8	F	383	386	parallel
Strand 9	F	65	67	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	508	510	first strand
Strand 2	G	444	448	anti-parallel
Strand 3	G	406	412	anti-parallel
Strand 4	G	401	403	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	35	37	first strand
Strand 2	G	490	492	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	56	first strand
Strand 2	G	59	61	anti-parallel

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There are 9 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	65	67	first strand
Strand 2	G	88	91	parallel
Strand 3	G	247	250	parallel
Strand 4	G	270	273	parallel
Strand 5	G	298	304	parallel
Strand 6	G	320	323	parallel
Strand 7	G	361	364	parallel
Strand 8	G	383	386	parallel
Strand 9	G	65	67	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	508	510	first strand
Strand 2	H	444	448	anti-parallel
Strand 3	H	406	412	anti-parallel
Strand 4	H	401	403	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	35	37	first strand
Strand 2	H	490	492	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	56	first strand
Strand 2	H	59	61	anti-parallel

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There are 9 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	65	67	first strand
Strand 2	H	88	91	parallel
Strand 3	H	247	250	parallel
Strand 4	H	270	273	parallel
Strand 5	H	298	304	parallel
Strand 6	H	320	323	parallel
Strand 7	H	361	364	parallel
Strand 8	H	383	386	parallel
Strand 9	H	65	67	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MUC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MUC