Analysis of interatomic Contacts of Structural Units in PDB entry:
9MVC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MVC entry

There are 6 chains in PDB entry 9MVC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 493
B	SER 1	THR 75
C	MET 1	ALA 493
D	SER 1	THR 75
E	MET 1	ALA 493
F	SER 1	THR 75

There are 48 helices in PDB entry 9MVC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	86	Right-handed 310
Helix 2	AA2	A	100	104	Right-handed 310
Helix 3	AA3	A	131	133	Right-handed 310
Helix 4	AA4	A	185	188	Right-handed 310
Helix 5	AA5	A	208	214	Right-handed alpha
Helix 6	AA6	A	231	234	Right-handed 310
Helix 7	AA7	A	254	262	Right-handed alpha
Helix 8	AA8	A	288	290	Right-handed 310
Helix 9	AA9	A	394	414	Right-handed alpha
Helix 10	AB1	A	415	420	Right-handed 310
Helix 11	AB2	A	425	447	Right-handed alpha
Helix 12	AB3	A	450	467	Right-handed alpha
Helix 13	AB4	A	470	489	Right-handed alpha
Helix 14	AB5	B	20	25	Right-handed alpha
Helix 15	AB6	B	26	39	Right-handed alpha
Helix 16	AB7	B	41	54	Right-handed alpha
Helix 17	AB8	B	56	74	Right-handed alpha
Helix 18	AB9	C	82	87	Right-handed 310
Helix 19	AC1	C	100	104	Right-handed 310
Helix 20	AC2	C	131	135	Right-handed 310
Helix 21	AC3	C	185	188	Right-handed 310
Helix 22	AC4	C	190	192	Right-handed 310
Helix 23	AC5	C	208	214	Right-handed alpha
Helix 24	AC6	C	231	234	Right-handed 310
Helix 25	AC7	C	254	260	Right-handed alpha
Helix 26	AC8	C	288	290	Right-handed 310
Helix 27	AC9	C	394	414	Right-handed alpha
Helix 28	AD1	C	415	420	Right-handed 310
Helix 29	AD2	C	424	447	Right-handed alpha
Helix 30	AD3	C	450	468	Right-handed alpha
Helix 31	AD4	C	470	489	Right-handed alpha
Helix 32	AD5	D	25	39	Right-handed alpha
Helix 33	AD6	D	41	54	Right-handed alpha
Helix 34	AD7	D	56	74	Right-handed alpha
Helix 35	AD8	E	82	86	Right-handed 310
Helix 36	AD9	E	131	135	Right-handed 310
Helix 37	AE1	E	184	188	Right-handed 310
Helix 38	AE2	E	208	214	Right-handed alpha
Helix 39	AE3	E	231	234	Right-handed 310
Helix 40	AE4	E	254	260	Right-handed alpha
Helix 41	AE5	E	394	414	Right-handed alpha
Helix 42	AE6	E	415	420	Right-handed 310
Helix 43	AE7	E	425	446	Right-handed alpha
Helix 44	AE8	E	450	468	Right-handed alpha
Helix 45	AE9	E	470	491	Right-handed alpha
Helix 46	AF1	F	26	37	Right-handed alpha
Helix 47	AF2	F	41	54	Right-handed alpha
Helix 48	AF3	F	56	74	Right-handed alpha

There are 27 sheets in PDB entry 9MVC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	31	35	parallel
Strand 3	A	38	50	anti-parallel
Strand 4	A	135	143	anti-parallel
Strand 5	A	158	162	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	31	35	parallel
Strand 3	A	38	50	anti-parallel
Strand 4	A	274	276	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	26	first strand
Strand 2	A	280	286	anti-parallel
Strand 3	A	179	183	anti-parallel
Strand 4	A	168	171	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	99	first strand
Strand 2	A	109	129	anti-parallel
Strand 3	A	54	73	anti-parallel
Strand 4	A	218	220	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	99	first strand
Strand 2	A	109	129	anti-parallel
Strand 3	A	194	198	anti-parallel
Strand 4	A	203	207	anti-parallel
Strand 5	A	266	268	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	238	first strand
Strand 2	A	248	250	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	306	first strand
Strand 2	A	318	324	anti-parallel
Strand 3	A	363	367	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	336	first strand
Strand 2	A	372	378	anti-parallel
Strand 3	A	385	391	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	30	34	parallel
Strand 3	C	41	45	anti-parallel
Strand 4	C	137	143	anti-parallel
Strand 5	C	158	162	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	25	first strand
Strand 2	C	281	286	anti-parallel
Strand 3	C	179	183	anti-parallel
Strand 4	C	168	171	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	129	first strand
Strand 2	C	54	60	anti-parallel
Strand 3	C	218	220	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	64	first strand
Strand 2	C	120	121	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	68	73	first strand
Strand 2	C	109	118	anti-parallel
Strand 3	C	90	99	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	196	first strand
Strand 2	C	203	207	anti-parallel
Strand 3	C	266	268	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	236	239	first strand
Strand 2	C	247	250	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	306	first strand
Strand 2	C	318	324	anti-parallel
Strand 3	C	311	312	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	306	first strand
Strand 2	C	318	324	anti-parallel
Strand 3	C	363	368	anti-parallel
Strand 4	C	348	349	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	332	first strand
Strand 2	C	355	356	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	338	first strand
Strand 2	C	372	378	anti-parallel
Strand 3	C	385	391	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	30	35	parallel
Strand 3	E	38	45	anti-parallel
Strand 4	E	137	143	anti-parallel
Strand 5	E	158	162	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	21	26	first strand
Strand 2	E	280	286	anti-parallel
Strand 3	E	179	182	anti-parallel
Strand 4	E	168	171	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	218	219	first strand
Strand 2	E	57	59	anti-parallel
Strand 3	E	125	128	anti-parallel
Strand 4	E	194	198	anti-parallel
Strand 5	E	203	207	anti-parallel
Strand 6	E	266	268	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	73	first strand
Strand 2	E	109	122	anti-parallel
Strand 3	E	90	99	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	236	239	first strand
Strand 2	E	247	250	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	298	299	first strand
Strand 2	E	331	332	parallel
Strand 3	E	355	356	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	313	first strand
Strand 2	E	317	324	anti-parallel
Strand 3	E	363	367	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	337	338	first strand
Strand 2	E	373	376	anti-parallel
Strand 3	E	387	390	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MVC

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MVC