Analysis of interatomic Contacts of Structural Units in PDB entry:
9MVE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MVE entry

There are 9 chains in PDB entry 9MVE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 493
B	SER 1	THR 75
C	MET 1	ALA 493
D	SER 1	THR 75
E	MET 1	ALA 493
F	SER 1	THR 75
K	CYS 253	SER 383
J	CYS 253	SER 383
L	CYS 253	SER 383

There are 58 helices in PDB entry 9MVE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	83	87	Right-handed 310
Helix 2	AA2	A	131	135	Right-handed 310
Helix 3	AA3	A	185	188	Right-handed 310
Helix 4	AA4	A	190	192	Right-handed 310
Helix 5	AA5	A	208	213	Right-handed alpha
Helix 6	AA6	A	231	234	Right-handed 310
Helix 7	AA7	A	254	260	Right-handed alpha
Helix 8	AA8	A	395	414	Right-handed alpha
Helix 9	AA9	A	415	420	Right-handed 310
Helix 10	AB1	A	427	446	Right-handed alpha
Helix 11	AB2	A	450	467	Right-handed alpha
Helix 12	AB3	A	470	488	Right-handed alpha
Helix 13	AB4	B	1	5	Right-handed 310
Helix 14	AB5	B	20	25	Right-handed alpha
Helix 15	AB6	B	26	37	Right-handed alpha
Helix 16	AB7	B	41	53	Right-handed alpha
Helix 17	AB8	B	56	71	Right-handed alpha
Helix 18	AB9	C	82	87	Right-handed 310
Helix 19	AC1	C	131	135	Right-handed 310
Helix 20	AC2	C	185	188	Right-handed 310
Helix 21	AC3	C	190	192	Right-handed 310
Helix 22	AC4	C	208	212	Right-handed alpha
Helix 23	AC5	C	231	236	Right-handed 310
Helix 24	AC6	C	254	260	Right-handed alpha
Helix 25	AC7	C	394	414	Right-handed alpha
Helix 26	AC8	C	415	420	Right-handed 310
Helix 27	AC9	C	425	446	Right-handed alpha
Helix 28	AD1	C	450	468	Right-handed alpha
Helix 29	AD2	C	470	490	Right-handed alpha
Helix 30	AD3	D	20	25	Right-handed alpha
Helix 31	AD4	D	26	39	Right-handed alpha
Helix 32	AD5	D	41	52	Right-handed alpha
Helix 33	AD6	D	56	74	Right-handed alpha
Helix 34	AD7	E	74	78	Right-handed 310
Helix 35	AD8	E	131	135	Right-handed 310
Helix 36	AD9	E	163	166	Right-handed 310
Helix 37	AE1	E	185	188	Right-handed 310
Helix 38	AE2	E	208	213	Right-handed alpha
Helix 39	AE3	E	231	234	Right-handed 310
Helix 40	AE4	E	254	262	Right-handed alpha
Helix 41	AE5	E	394	413	Right-handed alpha
Helix 42	AE6	E	414	420	Right-handed 310
Helix 43	AE7	E	426	446	Right-handed alpha
Helix 44	AE8	E	450	467	Right-handed alpha
Helix 45	AE9	E	470	489	Right-handed alpha
Helix 46	AF1	F	20	25	Right-handed alpha
Helix 47	AF2	F	26	39	Right-handed alpha
Helix 48	AF3	F	41	53	Right-handed alpha
Helix 49	AF4	F	56	74	Right-handed alpha
Helix 50	AF5	K	276	287	Right-handed alpha
Helix 51	AF6	K	296	311	Right-handed alpha
Helix 52	AF7	K	336	343	Right-handed 310
Helix 53	AF8	J	276	287	Right-handed alpha
Helix 54	AF9	J	296	311	Right-handed alpha
Helix 55	AG1	J	336	343	Right-handed 310
Helix 56	AG2	L	276	287	Right-handed alpha
Helix 57	AG3	L	296	311	Right-handed alpha
Helix 58	AG4	L	336	343	Right-handed 310

There are 35 sheets in PDB entry 9MVE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	30	35	parallel
Strand 3	A	38	50	anti-parallel
Strand 4	A	136	143	anti-parallel
Strand 5	A	158	162	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	30	35	parallel
Strand 3	A	38	50	anti-parallel
Strand 4	A	274	276	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	26	first strand
Strand 2	A	280	286	anti-parallel
Strand 3	A	178	183	anti-parallel
Strand 4	A	168	172	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	95	first strand
Strand 2	A	112	129	anti-parallel
Strand 3	A	54	73	anti-parallel
Strand 4	A	218	219	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	95	first strand
Strand 2	A	112	129	anti-parallel
Strand 3	A	194	196	anti-parallel
Strand 4	A	203	207	anti-parallel
Strand 5	A	267	268	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	99	first strand
Strand 2	A	109	110	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	239	first strand
Strand 2	A	247	250	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	306	first strand
Strand 2	A	318	324	anti-parallel
Strand 3	A	311	312	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	304	306	first strand
Strand 2	A	318	324	anti-parallel
Strand 3	A	363	368	anti-parallel
Strand 4	A	348	349	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	332	first strand
Strand 2	A	355	356	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	336	first strand
Strand 2	A	377	378	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	375	first strand
Strand 2	A	388	390	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	13	first strand
Strand 2	C	30	35	parallel
Strand 3	C	38	49	anti-parallel
Strand 4	C	136	143	anti-parallel
Strand 5	C	158	161	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	26	first strand
Strand 2	C	280	286	anti-parallel
Strand 3	C	179	183	anti-parallel
Strand 4	C	168	171	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	99	first strand
Strand 2	C	109	129	anti-parallel
Strand 3	C	54	72	anti-parallel
Strand 4	C	218	219	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	99	first strand
Strand 2	C	109	129	anti-parallel
Strand 3	C	194	198	anti-parallel
Strand 4	C	203	207	anti-parallel
Strand 5	C	266	268	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	238	first strand
Strand 2	C	248	249	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	306	first strand
Strand 2	C	318	324	anti-parallel
Strand 3	C	311	312	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	304	306	first strand
Strand 2	C	318	324	anti-parallel
Strand 3	C	363	366	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	331	332	first strand
Strand 2	C	355	356	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	339	first strand
Strand 2	C	372	378	anti-parallel
Strand 3	C	385	391	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	9	13	first strand
Strand 2	E	30	35	parallel
Strand 3	E	38	49	anti-parallel
Strand 4	E	136	143	anti-parallel
Strand 5	E	158	161	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	26	first strand
Strand 2	E	280	286	anti-parallel
Strand 3	E	179	184	anti-parallel
Strand 4	E	168	171	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	99	first strand
Strand 2	E	109	129	anti-parallel
Strand 3	E	54	72	anti-parallel
Strand 4	E	218	220	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	99	first strand
Strand 2	E	109	129	anti-parallel
Strand 3	E	194	197	anti-parallel
Strand 4	E	204	207	anti-parallel
Strand 5	E	266	267	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	236	239	first strand
Strand 2	E	247	250	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	304	312	first strand
Strand 2	E	318	324	anti-parallel
Strand 3	E	363	368	anti-parallel
Strand 4	E	348	349	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	331	332	first strand
Strand 2	E	355	356	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	336	339	first strand
Strand 2	E	372	378	anti-parallel
Strand 3	E	385	391	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	261	262	first strand
Strand 2	K	266	270	anti-parallel
Strand 3	K	374	380	anti-parallel
Strand 4	K	314	319	parallel
Strand 5	K	328	329	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	290	291	first strand
Strand 2	K	374	380	anti-parallel
Strand 3	K	314	319	parallel
Strand 4	K	356	360	anti-parallel
Strand 5	K	363	367	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	261	262	first strand
Strand 2	J	266	270	anti-parallel
Strand 3	J	376	380	anti-parallel
Strand 4	J	290	291	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	328	329	first strand
Strand 2	J	314	319	anti-parallel
Strand 3	J	356	360	anti-parallel
Strand 4	J	363	367	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	261	263	first strand
Strand 2	L	266	270	anti-parallel
Strand 3	L	374	380	anti-parallel
Strand 4	L	314	319	parallel
Strand 5	L	328	329	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	290	291	first strand
Strand 2	L	374	380	anti-parallel
Strand 3	L	314	319	parallel
Strand 4	L	356	360	anti-parallel
Strand 5	L	363	367	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MVE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MVE