Analysis of interatomic Contacts of Structural Units in PDB entry:
9MVF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MVF entry

There are 9 chains in PDB entry 9MVF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLN 494
D	SER 92	TYR 165
C	MET 1	GLN 494
B	SER 92	TYR 165
E	MET 1	GLN 494
F	SER 92	TYR 165
K	CYS 253	SER 383
L	CYS 253	SER 383
J	CYS 253	SER 383

There are 58 helices in PDB entry 9MVF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	82	86	Right-handed 310
Helix 2	AA2	A	100	104	Right-handed 310
Helix 3	AA3	A	131	135	Right-handed 310
Helix 4	AA4	A	187	190	Right-handed 310
Helix 5	AA5	A	192	194	Right-handed 310
Helix 6	AA6	A	210	215	Right-handed alpha
Helix 7	AA7	A	233	236	Right-handed 310
Helix 8	AA8	A	256	264	Right-handed alpha
Helix 9	AA9	A	382	386	Right-handed 310
Helix 10	AB1	A	396	416	Right-handed alpha
Helix 11	AB2	A	417	422	Right-handed 310
Helix 12	AB3	A	429	448	Right-handed alpha
Helix 13	AB4	A	452	470	Right-handed alpha
Helix 14	AB5	A	472	492	Right-handed alpha
Helix 15	AB6	D	92	96	Right-handed 310
Helix 16	AB7	D	117	130	Right-handed alpha
Helix 17	AB8	D	132	145	Right-handed alpha
Helix 18	AB9	D	149	162	Right-handed alpha
Helix 19	AC1	C	82	87	Right-handed 310
Helix 20	AC2	C	192	194	Right-handed 310
Helix 21	AC3	C	210	214	Right-handed alpha
Helix 22	AC4	C	233	236	Right-handed 310
Helix 23	AC5	C	242	246	Right-handed 310
Helix 24	AC6	C	256	264	Right-handed alpha
Helix 25	AC7	C	396	414	Right-handed alpha
Helix 26	AC8	C	418	422	Right-handed 310
Helix 27	AC9	C	427	448	Right-handed alpha
Helix 28	AD1	C	452	470	Right-handed alpha
Helix 29	AD2	C	472	492	Right-handed alpha
Helix 30	AD3	B	113	116	Right-handed 310
Helix 31	AD4	B	117	130	Right-handed alpha
Helix 32	AD5	B	132	145	Right-handed alpha
Helix 33	AD6	B	147	162	Right-handed alpha
Helix 34	AD7	E	1	5	Right-handed 310
Helix 35	AD8	E	100	104	Right-handed 310
Helix 36	AD9	E	192	194	Right-handed 310
Helix 37	AE1	E	210	214	Right-handed alpha
Helix 38	AE2	E	233	236	Right-handed 310
Helix 39	AE3	E	242	246	Right-handed 310
Helix 40	AE4	E	256	264	Right-handed alpha
Helix 41	AE5	E	396	416	Right-handed alpha
Helix 42	AE6	E	417	422	Right-handed 310
Helix 43	AE7	E	427	448	Right-handed alpha
Helix 44	AE8	E	452	468	Right-handed alpha
Helix 45	AE9	E	475	492	Right-handed alpha
Helix 46	AF1	F	92	96	Right-handed 310
Helix 47	AF2	F	120	128	Right-handed alpha
Helix 48	AF3	F	131	145	Right-handed alpha
Helix 49	AF4	F	149	161	Right-handed alpha
Helix 50	AF5	K	276	287	Right-handed alpha
Helix 51	AF6	K	296	311	Right-handed alpha
Helix 52	AF7	K	336	343	Right-handed 310
Helix 53	AF8	L	276	287	Right-handed alpha
Helix 54	AF9	L	296	311	Right-handed alpha
Helix 55	AG1	L	336	343	Right-handed 310
Helix 56	AG2	J	276	287	Right-handed alpha
Helix 57	AG3	J	296	311	Right-handed alpha
Helix 58	AG4	J	336	343	Right-handed 310

There are 31 sheets in PDB entry 9MVF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	30	35	parallel
Strand 3	A	38	45	anti-parallel
Strand 4	A	137	143	anti-parallel
Strand 5	A	160	164	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	26	first strand
Strand 2	A	282	288	anti-parallel
Strand 3	A	179	185	anti-parallel
Strand 4	A	170	175	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	222	first strand
Strand 2	A	54	60	anti-parallel
Strand 3	A	124	129	anti-parallel
Strand 4	A	196	201	anti-parallel
Strand 5	A	205	209	anti-parallel
Strand 6	A	268	269	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	73	first strand
Strand 2	A	109	121	anti-parallel
Strand 3	A	90	99	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	241	first strand
Strand 2	A	249	252	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	308	first strand
Strand 2	A	320	326	anti-parallel
Strand 3	A	313	314	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	308	first strand
Strand 2	A	320	326	anti-parallel
Strand 3	A	364	370	anti-parallel
Strand 4	A	350	351	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	341	first strand
Strand 2	A	374	379	anti-parallel
Strand 3	A	388	393	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	31	35	parallel
Strand 3	C	38	44	anti-parallel
Strand 4	C	138	143	anti-parallel
Strand 5	C	160	163	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	26	first strand
Strand 2	C	282	288	anti-parallel
Strand 3	C	182	186	anti-parallel
Strand 4	C	170	172	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	209	first strand
Strand 2	C	196	201	anti-parallel
Strand 3	C	123	129	anti-parallel
Strand 4	C	54	62	anti-parallel
Strand 5	C	220	221	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	69	73	first strand
Strand 2	C	112	117	anti-parallel
Strand 3	C	91	95	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	99	first strand
Strand 2	C	109	110	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	238	241	first strand
Strand 2	C	249	252	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	314	first strand
Strand 2	C	320	326	anti-parallel
Strand 3	C	363	370	anti-parallel
Strand 4	C	350	351	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	338	340	first strand
Strand 2	C	374	379	anti-parallel
Strand 3	C	389	393	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	13	first strand
Strand 2	E	31	34	parallel
Strand 3	E	41	50	anti-parallel
Strand 4	E	135	143	anti-parallel
Strand 5	E	160	163	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	25	first strand
Strand 2	E	283	288	anti-parallel
Strand 3	E	181	185	anti-parallel
Strand 4	E	170	173	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	222	first strand
Strand 2	E	53	62	anti-parallel
Strand 3	E	123	130	anti-parallel
Strand 4	E	196	201	anti-parallel
Strand 5	E	204	209	anti-parallel
Strand 6	E	268	270	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	65	73	first strand
Strand 2	E	112	119	anti-parallel
Strand 3	E	90	95	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	99	first strand
Strand 2	E	109	110	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	238	241	first strand
Strand 2	E	249	252	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	306	315	first strand
Strand 2	E	319	326	anti-parallel
Strand 3	E	364	369	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	333	334	first strand
Strand 2	E	357	358	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	374	377	first strand
Strand 2	E	390	393	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	261	263	first strand
Strand 2	K	266	270	anti-parallel
Strand 3	K	374	380	anti-parallel
Strand 4	K	314	323	parallel
Strand 5	K	326	329	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	290	291	first strand
Strand 2	K	374	380	anti-parallel
Strand 3	K	314	323	parallel
Strand 4	K	356	360	anti-parallel
Strand 5	K	363	367	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	261	263	first strand
Strand 2	L	266	270	anti-parallel
Strand 3	L	374	380	anti-parallel
Strand 4	L	314	323	parallel
Strand 5	L	326	329	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	290	291	first strand
Strand 2	L	374	380	anti-parallel
Strand 3	L	314	323	parallel
Strand 4	L	356	360	anti-parallel
Strand 5	L	363	367	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	261	263	first strand
Strand 2	J	266	270	anti-parallel
Strand 3	J	376	380	anti-parallel
Strand 4	J	290	291	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	328	329	first strand
Strand 2	J	314	319	anti-parallel
Strand 3	J	356	360	anti-parallel
Strand 4	J	363	367	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MVF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MVF