Analysis of interatomic Contacts of Structural Units in PDB entry:
9MVY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MVY entry

There are 5 chains in PDB entry 9MVY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 133	SER 885
B	T 1	T 18
C	T 2	T 9
C	T 11	A 18
D	GLU 134	ARG 689

There are 51 helices in PDB entry 9MVY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	143	151	Right-handed alpha
Helix 2	AA2	A	233	239	Right-handed 310
Helix 3	AA3	A	279	282	Right-handed 310
Helix 4	AA4	A	283	288	Right-handed alpha
Helix 5	AA5	A	300	303	Right-handed 310
Helix 6	AA6	A	351	365	Right-handed alpha
Helix 7	AA7	A	377	388	Right-handed alpha
Helix 8	AA8	A	397	415	Right-handed alpha
Helix 9	AA9	A	470	474	Right-handed 310
Helix 10	AB1	A	485	499	Right-handed alpha
Helix 11	AB2	A	535	552	Right-handed alpha
Helix 12	AB3	A	563	569	Right-handed 310
Helix 13	AB4	A	570	582	Right-handed alpha
Helix 14	AB5	A	595	598	Right-handed 310
Helix 15	AB6	A	637	641	Right-handed 310
Helix 16	AB7	A	658	663	Right-handed alpha
Helix 17	AB8	A	685	692	Right-handed alpha
Helix 18	AB9	A	695	699	Right-handed 310
Helix 19	AC1	A	723	733	Right-handed alpha
Helix 20	AC2	A	740	744	Right-handed 310
Helix 21	AC3	A	751	753	Right-handed 310
Helix 22	AC4	A	774	784	Right-handed alpha
Helix 23	AC5	A	806	809	Right-handed 310
Helix 24	AC6	A	822	830	Right-handed alpha
Helix 25	AC7	A	841	852	Right-handed alpha
Helix 26	AC8	A	854	871	Right-handed alpha
Helix 27	AC9	D	143	151	Right-handed alpha
Helix 28	AD1	D	233	239	Right-handed 310
Helix 29	AD2	D	281	289	Right-handed alpha
Helix 30	AD3	D	300	303	Right-handed 310
Helix 31	AD4	D	351	365	Right-handed alpha
Helix 32	AD5	D	377	388	Right-handed alpha
Helix 33	AD6	D	397	415	Right-handed alpha
Helix 34	AD7	D	485	500	Right-handed alpha
Helix 35	AD8	D	535	552	Right-handed alpha
Helix 36	AD9	D	563	569	Right-handed 310
Helix 37	AE1	D	570	583	Right-handed alpha
Helix 38	AE2	D	595	598	Right-handed 310
Helix 39	AE3	D	634	641	Right-handed 310
Helix 40	AE4	D	658	663	Right-handed alpha
Helix 41	AE5	D	685	692	Right-handed alpha
Helix 42	AE6	D	695	699	Right-handed 310
Helix 43	AE7	D	723	732	Right-handed alpha
Helix 44	AE8	D	740	744	Right-handed 310
Helix 45	AE9	D	751	753	Right-handed 310
Helix 46	AF1	D	774	780	Right-handed alpha
Helix 47	AF2	D	781	784	Right-handed 310
Helix 48	AF3	D	822	830	Right-handed alpha
Helix 49	AF4	D	841	851	Right-handed alpha
Helix 50	AF5	D	854	871	Right-handed alpha
Helix 51	AF6	D	883	887	Right-handed 310

There are 23 sheets in PDB entry 9MVY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	138	first strand
Strand 2	A	178	180	anti-parallel
Strand 3	A	185	187	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	176	first strand
Strand 2	A	203	213	anti-parallel
Strand 3	A	218	226	anti-parallel
Strand 4	A	252	261	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	176	first strand
Strand 2	A	203	213	anti-parallel
Strand 3	A	191	194	anti-parallel
Strand 4	A	265	268	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	292	294	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	299	first strand
Strand 2	A	304	307	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	341	first strand
Strand 2	A	367	368	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	394	first strand
Strand 2	A	372	374	parallel
Strand 3	A	343	346	parallel
Strand 4	A	510	513	parallel
Strand 5	A	555	561	parallel
Strand 6	A	604	611	anti-parallel
Strand 7	A	586	593	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	451	first strand
Strand 2	A	460	466	anti-parallel
Strand 3	A	475	478	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	621	first strand
Strand 2	A	879	880	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	644	645	first strand
Strand 2	P	18	19	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	676	677	first strand
Strand 2	A	714	715	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	747	749	first strand
Strand 2	A	755	757	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	790	791	first strand
Strand 2	A	811	813	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	138	first strand
Strand 2	D	178	181	anti-parallel
Strand 3	D	184	187	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	176	first strand
Strand 2	D	203	213	anti-parallel
Strand 3	D	218	226	anti-parallel
Strand 4	D	252	261	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	176	first strand
Strand 2	D	203	213	anti-parallel
Strand 3	D	191	194	anti-parallel
Strand 4	D	265	268	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	273	first strand
Strand 2	D	292	294	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	296	299	first strand
Strand 2	D	304	307	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	392	395	first strand
Strand 2	D	366	375	parallel
Strand 3	D	339	346	parallel
Strand 4	D	510	513	parallel
Strand 5	D	555	561	parallel
Strand 6	D	604	611	anti-parallel
Strand 7	D	586	593	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	443	451	first strand
Strand 2	D	460	466	anti-parallel
Strand 3	D	475	478	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	620	621	first strand
Strand 2	D	879	880	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	676	677	first strand
Strand 2	D	714	715	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	747	749	first strand
Strand 2	D	755	757	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MVY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MVY