Analysis of interatomic Contacts of Structural Units in PDB entry:
9MW6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MW6 entry

There are 3 chains in PDB entry 9MW6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 8ASN 648
B
 A 1 G 27
C
 C 1 U 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9MW6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 24Right-handed alpha
Helix 2
AA2
A
37 48Right-handed alpha
Helix 3
AA3
A
49 52Right-handed 310
Helix 4
AA4
A
69 84Right-handed alpha
Helix 5
AA5
A
92 100Right-handed 310
Helix 6
AA6
A
101 112Right-handed alpha
Helix 7
AA7
A
119 128Right-handed alpha
Helix 8
AA8
A
144 147Right-handed 310
Helix 9
AA9
A
151 163Right-handed alpha
Helix 10
AB1
A
184 186Right-handed 310
Helix 11
AB2
A
187 200Right-handed alpha
Helix 12
AB3
A
211 216Right-handed alpha
Helix 13
AB4
A
339 343Right-handed 310
Helix 14
AB5
A
344 362Right-handed alpha
Helix 15
AB6
A
376 391Right-handed alpha
Helix 16
AB7
A
397 401Right-handed 310
Helix 17
AB8
A
423 437Right-handed alpha
Helix 18
AB9
A
468 478Right-handed alpha
Helix 19
AC1
A
494 516Right-handed alpha
Helix 20
AC2
A
524 529Right-handed alpha
Helix 21
AC3
A
541 545Right-handed 310
Helix 22
AC4
A
549 551Right-handed 310
Helix 23
AC5
A
552 564Right-handed alpha
Helix 24
AC6
A
613 632Right-handed alpha
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There are 4 sheets in PDB entry 9MW6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 90first strand
Strand 2
A
114 118parallel
Strand 3
A
62 67parallel
Strand 4
A
136 142parallel
Strand 5
A
170 174parallel
Strand 6
A
27 29parallel
Strand 7
A
202 204parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 228first strand
Strand 2
A
485 491parallel
Strand 3
A
459 462parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 373first strand
Strand 2
A
441 444parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
576 582first strand
Strand 2
A
588 594anti-parallel
Strand 3
A
606 607anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il