Analysis of interatomic Contacts of Structural Units in PDB entry:
9MWY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MWY entry

There are 6 chains in PDB entry 9MWY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 276PRO 371
D
 SER 271PRO 373
C
 ARG 272PRO 373
L
 GLN 280LEU 369
G
 G -3 G 21
H
 C 3 C 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9MWY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
282 292Right-handed alpha
Helix 2
AA2
A
313 325Right-handed alpha
Helix 3
AA3
A
331 341Right-handed alpha
Helix 4
AA4
A
361 368Right-handed alpha
Helix 5
AA5
D
282 293Right-handed alpha
Helix 6
AA6
D
294 297Right-handed 310
Helix 7
AA7
D
313 325Right-handed alpha
Helix 8
AA8
D
331 340Right-handed alpha
Helix 9
AA9
D
361 370Right-handed alpha
Helix 10
AB1
C
282 293Right-handed alpha
Helix 11
AB2
C
294 297Right-handed 310
Helix 12
AB3
C
313 325Right-handed alpha
Helix 13
AB4
C
331 346Right-handed alpha
Helix 14
AB5
C
362 370Right-handed alpha
Helix 15
AB6
L
282 288Right-handed alpha
Helix 16
AB7
L
288 293Right-handed alpha
Helix 17
AB8
L
294 297Right-handed 310
Helix 18
AB9
L
313 326Right-handed alpha
Helix 19
AC1
L
331 340Right-handed alpha
Helix 20
AC2
L
361 366Right-handed alpha
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There are 5 sheets in PDB entry 9MWY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 301first strand
Strand 2
A
309 311anti-parallel
Strand 3
A
357 360anti-parallel
Strand 4
A
348 350anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
300 302first strand
Strand 2
D
308 311anti-parallel
Strand 3
D
357 360anti-parallel
Strand 4
D
348 350anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
301 302first strand
Strand 2
C
308 310anti-parallel
Strand 3
C
357 360anti-parallel
Strand 4
C
348 350anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
300 302first strand
Strand 2
L
309 311anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
348 350first strand
Strand 2
L
358 360anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il