Analysis of interatomic Contacts of Structural Units in PDB entry:
9MX3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MX3 entry

There are 3 chains in PDB entry 9MX3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6ARG 646
C
 G 5 U 21
B
 U 8 C 23
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 9MX3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
36 48Right-handed alpha
Helix 3
AA3
A
49 52Right-handed 310
Helix 4
AA4
A
69 84Right-handed alpha
Helix 5
AA5
A
96 100Right-handed 310
Helix 6
AA6
A
101 112Right-handed alpha
Helix 7
AA7
A
119 128Right-handed alpha
Helix 8
AA8
A
143 147Right-handed 310
Helix 9
AA9
A
151 162Right-handed alpha
Helix 10
AB1
A
187 200Right-handed alpha
Helix 11
AB2
A
208 216Right-handed alpha
Helix 12
AB3
A
217 220Right-handed 310
Helix 13
AB4
A
234 257Right-handed alpha
Helix 14
AB5
A
262 283Right-handed alpha
Helix 15
AB6
A
284 300Right-handed alpha
Helix 16
AB7
A
301 304Right-handed 310
Helix 17
AB8
A
307 336Right-handed alpha
Helix 18
AB9
A
338 343Right-handed alpha
Helix 19
AC1
A
344 364Right-handed alpha
Helix 20
AC2
A
377 393Right-handed alpha
Helix 21
AC3
A
425 437Right-handed alpha
Helix 22
AC4
A
468 479Right-handed alpha
Helix 23
AC5
A
494 515Right-handed alpha
Helix 24
AC6
A
523 529Right-handed alpha
Helix 25
AC7
A
541 545Right-handed 310
Helix 26
AC8
A
553 563Right-handed alpha
Helix 27
AC9
A
613 633Right-handed alpha
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There are 3 sheets in PDB entry 9MX3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
114 118parallel
Strand 3
A
62 67parallel
Strand 4
A
136 141parallel
Strand 5
A
170 175parallel
Strand 6
A
27 30parallel
Strand 7
A
202 204parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 228first strand
Strand 2
A
485 491parallel
Strand 3
A
459 462parallel
Strand 4
A
370 373parallel
Strand 5
A
441 444parallel
Strand 6
A
403 406parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
575 582first strand
Strand 2
A
588 595anti-parallel
Strand 3
A
606 607anti-parallel
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