Analysis of interatomic Contacts of Structural Units in PDB entry:
9MX5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MX5 entry

There are 3 chains in PDB entry 9MX5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 652
B
 A 1 G 27
C
 C 1 U 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9MX5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
37 48Right-handed alpha
Helix 3
AA3
A
49 52Right-handed 310
Helix 4
AA4
A
69 84Right-handed alpha
Helix 5
AA5
A
101 112Right-handed alpha
Helix 6
AA6
A
119 128Right-handed alpha
Helix 7
AA7
A
132 134Right-handed 310
Helix 8
AA8
A
144 147Right-handed 310
Helix 9
AA9
A
151 162Right-handed alpha
Helix 10
AB1
A
164 168Right-handed 310
Helix 11
AB2
A
187 200Right-handed alpha
Helix 12
AB3
A
234 258Right-handed alpha
Helix 13
AB4
A
262 283Right-handed alpha
Helix 14
AB5
A
284 303Right-handed alpha
Helix 15
AB6
A
307 331Right-handed alpha
Helix 16
AB7
A
332 337Right-handed alpha
Helix 17
AB8
A
344 364Right-handed alpha
Helix 18
AB9
A
376 394Right-handed alpha
Helix 19
AC1
A
423 437Right-handed alpha
Helix 20
AC2
A
468 479Right-handed alpha
Helix 21
AC3
A
494 516Right-handed alpha
Helix 22
AC4
A
523 530Right-handed alpha
Helix 23
AC5
A
549 551Right-handed 310
Helix 24
AC6
A
552 564Right-handed alpha
Helix 25
AC7
A
613 633Right-handed alpha
Helix 26
AC8
A
645 652Right-handed alpha
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There are 3 sheets in PDB entry 9MX5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
114 118parallel
Strand 3
A
62 67parallel
Strand 4
A
136 142parallel
Strand 5
A
170 175parallel
Strand 6
A
27 30parallel
Strand 7
A
202 204parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 228first strand
Strand 2
A
485 491parallel
Strand 3
A
459 462parallel
Strand 4
A
370 373parallel
Strand 5
A
441 444parallel
Strand 6
A
403 406parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
575 582first strand
Strand 2
A
588 595anti-parallel
Strand 3
A
606 607anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il