Analysis of interatomic Contacts of Structural Units in PDB entry:
9MX8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MX8 entry

There are 5 chains in PDB entry 9MX8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 262PRO 373
C
 GLN 280PRO 373
D
 SER 271PRO 373
E
 G -3 G 15
F
 C 1 C 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 9MX8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
265 273Right-handed alpha
Helix 2
AA2
A
282 292Right-handed alpha
Helix 3
AA3
A
313 325Right-handed alpha
Helix 4
AA4
A
331 341Right-handed alpha
Helix 5
AA5
A
361 370Right-handed alpha
Helix 6
AA6
C
282 292Right-handed alpha
Helix 7
AA7
C
293 297Right-handed 310
Helix 8
AA8
C
313 325Right-handed alpha
Helix 9
AA9
C
331 346Right-handed alpha
Helix 10
AB1
C
361 367Right-handed alpha
Helix 11
AB2
D
282 293Right-handed alpha
Helix 12
AB3
D
294 297Right-handed 310
Helix 13
AB4
D
313 326Right-handed alpha
Helix 14
AB5
D
331 341Right-handed alpha
Helix 15
AB6
D
342 344Right-handed 310
Helix 16
AB7
D
361 370Right-handed alpha
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There are 3 sheets in PDB entry 9MX8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 302first strand
Strand 2
A
308 311anti-parallel
Strand 3
A
357 360anti-parallel
Strand 4
A
348 350anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
300 302first strand
Strand 2
C
308 311anti-parallel
Strand 3
C
357 360anti-parallel
Strand 4
C
348 350anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
300 302first strand
Strand 2
D
308 311anti-parallel
Strand 3
D
357 360anti-parallel
Strand 4
D
348 350anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il