Analysis of interatomic Contacts of Structural Units in PDB entry:
9MXQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MXQ entry

There are 2 chains in PDB entry 9MXQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 5GLY 541
B
 THR 7PRO 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 9MXQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 44Right-handed alpha
Helix 2
AA2
A
77 83Right-handed alpha
Helix 3
AA3
A
113 117Right-handed 310
Helix 4
AA4
A
121 126Right-handed alpha
Helix 5
AA5
A
155 175Right-handed alpha
Helix 6
AA6
A
194 212Right-handed alpha
Helix 7
AA7
A
254 269Right-handed alpha
Helix 8
AA8
A
277 283Right-handed alpha
Helix 9
AA9
A
296 310Right-handed alpha
Helix 10
AB1
A
365 383Right-handed alpha
Helix 11
AB2
A
394 401Right-handed alpha
Helix 12
AB3
A
475 485Right-handed alpha
Helix 13
AB4
A
502 508Right-handed alpha
Helix 14
AB5
A
515 526Right-handed alpha
Helix 15
AB6
B
27 45Right-handed alpha
Helix 16
AB7
B
78 84Right-handed alpha
Helix 17
AB8
B
84 92Right-handed alpha
Helix 18
AB9
B
155 168Right-handed alpha
Helix 19
AC1
B
168 175Right-handed alpha
Helix 20
AC2
B
194 212Right-handed alpha
Helix 21
AC3
B
257 267Right-handed alpha
Helix 22
AC4
B
276 281Right-handed 310
Helix 23
AC5
B
296 311Right-handed alpha
Helix 24
AC6
B
363 384Right-handed alpha
Helix 25
AC7
B
394 402Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 9MXQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
143 146anti-parallel
Strand 3
A
129 131anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 110first strand
Strand 2
A
186 191anti-parallel
Strand 3
A
179 183anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
292 293anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 333first strand
Strand 2
A
336 342anti-parallel
Strand 3
A
353 354anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 48first strand
Strand 2
B
142 146anti-parallel
Strand 3
B
129 132anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 64first strand
Strand 2
B
71 75anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 180first strand
Strand 2
B
188 191anti-parallel
Strand 3
B
105 108anti-parallel
Strand 4
B
233 234anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
348 355first strand
Strand 2
B
336 342anti-parallel
Strand 3
B
326 330anti-parallel
Strand 4
B
388 390parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il