Analysis of interatomic Contacts of Structural Units in PDB entry:
9MY7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MY7 entry

There are 2 chains in PDB entry 9MY7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 3LYS 437
A
 LYS 3LYS 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 9MY7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
12 22Right-handed alpha
Helix 2
AA2
B
31 41Right-handed alpha
Helix 3
AA3
B
56 73Right-handed alpha
Helix 4
AA4
B
88 102Right-handed alpha
Helix 5
AA5
B
113 125Right-handed alpha
Helix 6
AA6
B
135 139Right-handed 310
Helix 7
AA7
B
141 150Right-handed alpha
Helix 8
AA8
B
169 175Right-handed alpha
Helix 9
AA9
B
211 226Right-handed alpha
Helix 10
AB1
B
241 247Right-handed alpha
Helix 11
AB2
B
248 256Right-handed alpha
Helix 12
AB3
B
267 278Right-handed alpha
Helix 13
AB4
B
286 298Right-handed alpha
Helix 14
AB5
B
299 301Right-handed 310
Helix 15
AB6
B
318 323Right-handed alpha
Helix 16
AB7
B
323 330Right-handed alpha
Helix 17
AB8
B
352 359Right-handed alpha
Helix 18
AB9
B
402 410Right-handed alpha
Helix 19
AC1
A
12 22Right-handed alpha
Helix 20
AC2
A
31 41Right-handed alpha
Helix 21
AC3
A
56 73Right-handed alpha
Helix 22
AC4
A
88 102Right-handed alpha
Helix 23
AC5
A
113 125Right-handed alpha
Helix 24
AC6
A
135 139Right-handed 310
Helix 25
AC7
A
141 150Right-handed alpha
Helix 26
AC8
A
170 175Right-handed alpha
Helix 27
AC9
A
211 225Right-handed alpha
Helix 28
AD1
A
241 247Right-handed alpha
Helix 29
AD2
A
248 257Right-handed alpha
Helix 30
AD3
A
268 278Right-handed alpha
Helix 31
AD4
A
286 297Right-handed alpha
Helix 32
AD5
A
298 305Right-handed 310
Helix 33
AD6
A
318 323Right-handed alpha
Helix 34
AD7
A
323 329Right-handed alpha
Helix 35
AD8
A
352 359Right-handed alpha
Helix 36
AD9
A
402 410Right-handed alpha
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There are 5 sheets in PDB entry 9MY7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 55first strand
Strand 2
B
45 49anti-parallel
Strand 3
B
259 262parallel
Strand 4
B
232 235parallel
Strand 5
B
282 285parallel
Strand 6
B
309 312parallel
Strand 7
B
332 338parallel
Strand 8
B
344 346anti-parallel
Strand 9
B
362 363anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 168first strand
Strand 2
B
156 160parallel
Strand 3
B
128 132parallel
Strand 4
B
80 83parallel
Strand 5
B
104 107parallel
Strand 6
B
191 196parallel
Strand 7
B
206 210anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 373first strand
Strand 2
B
386 391anti-parallel
Strand 3
B
416 424anti-parallel
Strand 4
B
430 436anti-parallel
Strand 5
A
430 436anti-parallel
Strand 6
A
416 424anti-parallel
Strand 7
A
386 391anti-parallel
Strand 8
A
369 373anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
45 49anti-parallel
Strand 3
A
259 262parallel
Strand 4
A
232 235parallel
Strand 5
A
282 285parallel
Strand 6
A
309 313parallel
Strand 7
A
332 338parallel
Strand 8
A
344 346anti-parallel
Strand 9
A
362 363anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 168first strand
Strand 2
A
156 160parallel
Strand 3
A
128 132parallel
Strand 4
A
80 83parallel
Strand 5
A
104 107parallel
Strand 6
A
191 196parallel
Strand 7
A
206 210anti-parallel
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