Analysis of interatomic Contacts of Structural Units in PDB entry:
9MY8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MY8 entry

There are 4 chains in PDB entry 9MY8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 VAL 2PRO 228
L
 MET 4ARG 211
A
 GLU 1SER 119
B
 VAL 24GLY 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9MY8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
28 30Right-handed 310
Helix 2
AA2
H
87 91Right-handed 310
Helix 3
AA3
H
201 207Right-handed alpha
Helix 4
AA4
L
122 127Right-handed alpha
Helix 5
AA5
L
182 189Right-handed alpha
Helix 6
AA6
A
86 90Right-handed 310
Helix 7
AA7
B
76 83Right-handed alpha
Helix 8
AA8
B
85 90Right-handed alpha
Helix 9
AA9
B
157 161Right-handed 310
Helix 10
AB1
B
198 202Right-handed 310
Helix 11
AB2
B
204 211Right-handed alpha
Helix 12
AB3
B
224 240Right-handed alpha
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There are 14 sheets in PDB entry 9MY8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
19 25anti-parallel
Strand 3
H
78 82anti-parallel
Strand 4
H
69 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
122 126parallel
Strand 3
H
92 100anti-parallel
Strand 4
H
32 39anti-parallel
Strand 5
H
45 52anti-parallel
Strand 6
H
57 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
122 126parallel
Strand 3
H
92 100anti-parallel
Strand 4
H
117 118anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
135 137first strand
Strand 2
H
152 160anti-parallel
Strand 3
H
191 198anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
5 6first strand
Strand 2
L
19 24anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
48 49first strand
Strand 2
L
53 54anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
89 91first strand
Strand 2
L
96 98anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
115 118first strand
Strand 2
L
133 139anti-parallel
Strand 3
L
173 178anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
154 155first strand
Strand 2
L
147 150anti-parallel
Strand 3
L
192 195anti-parallel
Strand 4
L
207 209anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
18 23anti-parallel
Strand 3
A
79 82anti-parallel
Strand 4
A
67 70anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
113 117parallel
Strand 3
A
91 98anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
46 52anti-parallel
Strand 6
A
57 59anti-parallel
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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
129 131parallel
Strand 3
B
106 119anti-parallel
Strand 4
B
92 103anti-parallel
Strand 5
B
162 170anti-parallel
Strand 6
B
173 181anti-parallel
Strand 7
B
56 60parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 37first strand
Strand 2
B
129 131parallel
Strand 3
B
106 119anti-parallel
Strand 4
B
134 135anti-parallel
Strand 5
B
220 221anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
69 71first strand
Strand 2
B
151 153anti-parallel
Strand 3
B
142 144anti-parallel
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