Analysis of interatomic Contacts of Structural Units in PDB entry:
9MYE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MYE entry

There are 3 chains in PDB entry 9MYE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 747
T
 G 5 C 17
P
 G 2 U 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9MYE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 46Right-handed 310
Helix 2
AA2
A
47 53Right-handed alpha
Helix 3
AA3
A
89 91Right-handed 310
Helix 4
AA4
A
92 103Right-handed alpha
Helix 5
AA5
A
115 124Right-handed alpha
Helix 6
AA6
A
186 202Right-handed alpha
Helix 7
AA7
A
214 226Right-handed alpha
Helix 8
AA8
A
260 268Right-handed alpha
Helix 9
AA9
A
274 283Right-handed alpha
Helix 10
AB1
A
291 302Right-handed alpha
Helix 11
AB2
A
304 338Right-handed alpha
Helix 12
AB3
A
340 345Right-handed alpha
Helix 13
AB4
A
348 364Right-handed alpha
Helix 14
AB5
A
373 383Right-handed alpha
Helix 15
AB6
A
408 418Right-handed alpha
Helix 16
AB7
A
448 470Right-handed alpha
Helix 17
AB8
A
473 493Right-handed alpha
Helix 18
AB9
A
493 498Right-handed alpha
Helix 19
AC1
A
507 532Right-handed alpha
Helix 20
AC2
A
553 572Right-handed alpha
Helix 21
AC3
A
609 613Right-handed 310
Helix 22
AC4
A
617 633Right-handed alpha
Helix 23
AC5
A
636 653Right-handed alpha
Helix 24
AC6
A
657 662Right-handed 310
Helix 25
AC7
A
670 674Right-handed 310
Helix 26
AC8
A
678 690Right-handed alpha
Helix 27
AC9
A
710 713Right-handed 310
Helix 28
AD1
A
719 721Right-handed 310
Helix 29
AD2
A
729 736Right-handed alpha
Helix 30
AD3
A
737 747Right-handed alpha
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There are 7 sheets in PDB entry 9MYE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 10first strand
Strand 2
A
13 22anti-parallel
Strand 3
A
25 31anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
61 75anti-parallel
Strand 3
A
78 87anti-parallel
Strand 4
A
37 42anti-parallel
Strand 5
A
106 110anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
168 172parallel
Strand 3
A
157 163anti-parallel
Strand 4
A
137 144anti-parallel
Strand 5
A
205 208parallel
Strand 6
A
256 259parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 243first strand
Strand 2
A
248 251anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 391first strand
Strand 2
A
536 541anti-parallel
Strand 3
A
544 548anti-parallel
Strand 4
A
396 406anti-parallel
Strand 5
A
578 591anti-parallel
Strand 6
A
594 598anti-parallel
Strand 7
A
604 607anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 434first strand
Strand 2
A
441 443anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
663 666first strand
Strand 2
A
699 704anti-parallel
Strand 3
A
715 717anti-parallel
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