Analysis of interatomic Contacts of Structural Units in PDB entry:
9MYJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MYJ entry

There are 2 chains in PDB entry 9MYJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 50LYS 303
B
 GLU 45ALA 481
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9MYJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 62Right-handed alpha
Helix 2
AA2
A
85 89Right-handed 310
Helix 3
AA3
A
100 111Right-handed alpha
Helix 4
AA4
A
133 140Right-handed alpha
Helix 5
AA5
A
159 163Right-handed 310
Helix 6
AA6
A
216 220Right-handed alpha
Helix 7
AA7
A
221 223Right-handed 310
Helix 8
AA8
A
240 247Right-handed alpha
Helix 9
AA9
A
264 268Right-handed 310
Helix 10
AB1
A
271 292Right-handed alpha
Helix 11
AB2
B
92 114Right-handed alpha
Helix 12
AB3
B
115 118Right-handed 310
Helix 13
AB4
B
151 161Right-handed alpha
Helix 14
AB5
B
186 191Right-handed alpha
Helix 15
AB6
B
198 202Right-handed 310
Helix 16
AB7
B
242 245Right-handed 310
Helix 17
AB8
B
259 264Right-handed alpha
Helix 18
AB9
B
270 275Right-handed alpha
Helix 19
AC1
B
292 310Right-handed alpha
Helix 20
AC2
B
326 335Right-handed alpha
Helix 21
AC3
B
407 412Right-handed 310
Helix 22
AC4
B
444 449Right-handed alpha
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There are 8 sheets in PDB entry 9MYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
187 194anti-parallel
Strand 3
A
170 178anti-parallel
Strand 4
A
71 79anti-parallel
Strand 5
A
253 257anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 197first strand
Strand 2
A
209 210anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
84 87anti-parallel
Strand 3
B
470 472anti-parallel
Strand 4
B
322 323anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
79 81anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 164first strand
Strand 2
B
171 173anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 185first strand
Strand 2
B
247 253anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 221first strand
Strand 2
B
235 236anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
434 437first strand
Strand 2
B
397 403anti-parallel
Strand 3
B
465 466parallel
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