Analysis of interatomic Contacts of Structural Units in PDB entry:
9MYL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MYL entry

There are 6 chains in PDB entry 9MYL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	CYS 22	VAL 250
D	CYS 22	TYR 248
H	GLU 1	ARG 215
L	ASP 1	ASN 209
A	GLU 1	ASP 216
B	ASP 1	ARG 210

There are 29 helices in PDB entry 9MYL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	22	25	Right-handed 310
Helix 2	AA2	C	26	39	Right-handed alpha
Helix 3	AA3	C	40	44	Right-handed 310
Helix 4	AA4	C	46	48	Right-handed 310
Helix 5	AA5	C	49	62	Right-handed alpha
Helix 6	AA6	C	73	75	Right-handed 310
Helix 7	AA7	C	80	100	Right-handed alpha
Helix 8	AA8	C	104	133	Right-handed alpha
Helix 9	AA9	C	186	190	Right-handed 310
Helix 10	AB1	D	26	39	Right-handed alpha
Helix 11	AB2	D	40	44	Right-handed 310
Helix 12	AB3	D	46	48	Right-handed 310
Helix 13	AB4	D	49	62	Right-handed alpha
Helix 14	AB5	D	72	75	Right-handed 310
Helix 15	AB6	D	80	99	Right-handed alpha
Helix 16	AB7	D	104	133	Right-handed alpha
Helix 17	AB8	H	28	32	Right-handed 310
Helix 18	AB9	H	62	65	Right-handed 310
Helix 19	AC1	H	87	91	Right-handed 310
Helix 20	AC2	H	158	160	Right-handed 310
Helix 21	AC3	L	79	83	Right-handed 310
Helix 22	AC4	L	120	126	Right-handed alpha
Helix 23	AC5	L	182	187	Right-handed alpha
Helix 24	AC6	A	28	32	Right-handed 310
Helix 25	AC7	A	87	91	Right-handed 310
Helix 26	AC8	A	202	205	Right-handed 310
Helix 27	AC9	B	79	83	Right-handed 310
Helix 28	AD1	B	120	126	Right-handed alpha
Helix 29	AD2	B	182	186	Right-handed alpha

There are 25 sheets in PDB entry 9MYL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	79	first strand
Strand 2	C	142	148	anti-parallel
Strand 3	C	153	159	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	168	first strand
Strand 2	C	242	248	parallel
Strand 3	C	231	237	anti-parallel
Strand 4	C	193	201	anti-parallel
Strand 5	C	207	213	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	79	first strand
Strand 2	D	143	148	anti-parallel
Strand 3	D	153	158	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	193	197	first strand
Strand 2	D	234	237	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	109	113	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	40	anti-parallel
Strand 5	H	44	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	109	113	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	103	105	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	122	126	first strand
Strand 2	H	137	147	anti-parallel
Strand 3	H	177	186	anti-parallel
Strand 4	H	171	172	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	153	156	first strand
Strand 2	H	196	201	anti-parallel
Strand 3	H	206	211	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	5	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	103	106	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	49	anti-parallel
Strand 3	L	33	38	anti-parallel
Strand 4	L	85	90	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	113	117	first strand
Strand 2	L	128	138	anti-parallel
Strand 3	L	172	181	anti-parallel
Strand 4	L	158	162	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	152	153	first strand
Strand 2	L	144	149	anti-parallel
Strand 3	L	191	196	anti-parallel
Strand 4	L	204	208	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	78	83	anti-parallel
Strand 4	A	68	73	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	109	113	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	33	40	anti-parallel
Strand 5	A	44	51	anti-parallel
Strand 6	A	58	60	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	109	113	parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	103	105	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	126	first strand
Strand 2	A	137	147	anti-parallel
Strand 3	A	176	186	anti-parallel
Strand 4	A	165	167	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	126	first strand
Strand 2	A	137	147	anti-parallel
Strand 3	A	176	186	anti-parallel
Strand 4	A	171	173	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	156	first strand
Strand 2	A	196	201	anti-parallel
Strand 3	A	206	211	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	5	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	62	66	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	103	106	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	48	first strand
Strand 2	B	33	38	anti-parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	97	98	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	117	first strand
Strand 2	B	128	138	anti-parallel
Strand 3	B	172	181	anti-parallel
Strand 4	B	158	163	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	154	first strand
Strand 2	B	144	149	anti-parallel
Strand 3	B	191	196	anti-parallel
Strand 4	B	204	208	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MYL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MYL