Analysis of interatomic Contacts of Structural Units in PDB entry:
9MYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MYP entry

There are 6 chains in PDB entry 9MYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 333LYS 493
A
 TYR 495LYS 498
C
 MET 333LYS 493
C
 TYR 495GLU 497
B
 MET 333LYS 493
B
 TYR 495LYS 498
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9MYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
380 383Right-handed 310
Helix 2
AA2
A
386 390Right-handed 310
Helix 3
AA3
A
396 401Right-handed alpha
Helix 4
AA4
A
411 416Right-handed alpha
Helix 5
AA5
A
418 436Right-handed alpha
Helix 6
AA6
A
442 451Right-handed alpha
Helix 7
AA7
A
453 467Right-handed alpha
Helix 8
AA8
A
483 496Right-handed alpha
Helix 9
AA9
C
380 383Right-handed 310
Helix 10
AB1
C
386 390Right-handed 310
Helix 11
AB2
C
397 403Right-handed 310
Helix 12
AB3
C
411 416Right-handed alpha
Helix 13
AB4
C
418 436Right-handed alpha
Helix 14
AB5
C
442 451Right-handed alpha
Helix 15
AB6
C
453 467Right-handed alpha
Helix 16
AB7
C
483 496Right-handed alpha
Helix 17
AB8
B
380 383Right-handed 310
Helix 18
AB9
B
398 402Right-handed 310
Helix 19
AC1
B
411 415Right-handed 310
Helix 20
AC2
B
418 436Right-handed alpha
Helix 21
AC3
B
442 451Right-handed alpha
Helix 22
AC4
B
453 467Right-handed alpha
Helix 23
AC5
B
483 496Right-handed alpha
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There are 6 sheets in PDB entry 9MYP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 378first strand
Strand 2
A
366 369anti-parallel
Strand 3
C
345 347anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
440 441first strand
Strand 2
A
480 481anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
367 369first strand
Strand 2
C
376 378anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
440 441first strand
Strand 2
C
480 481anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
367 369first strand
Strand 2
B
376 378anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
440 441first strand
Strand 2
B
480 481anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il