Analysis of interatomic Contacts of Structural Units in PDB entry:
9MYR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MYR entry

There are 3 chains in PDB entry 9MYR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 404
B	TRP 3	ASP 144
C	MET 1	PHE 138

There are 47 helices in PDB entry 9MYR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	44	Right-handed alpha
Helix 2	AA2	A	46	50	Right-handed 310
Helix 3	AA3	A	66	76	Right-handed alpha
Helix 4	AA4	A	87	89	Right-handed 310
Helix 5	AA5	A	90	105	Right-handed alpha
Helix 6	AA6	A	147	153	Right-handed alpha
Helix 7	AA7	A	154	157	Right-handed 310
Helix 8	AA8	A	161	177	Right-handed alpha
Helix 9	AA9	A	179	196	Right-handed alpha
Helix 10	AB1	A	208	215	Right-handed alpha
Helix 11	AB2	A	225	227	Right-handed 310
Helix 12	AB3	A	242	247	Right-handed alpha
Helix 13	AB4	A	266	270	Right-handed 310
Helix 14	AB5	A	277	289	Right-handed alpha
Helix 15	AB6	A	292	296	Right-handed 310
Helix 16	AB7	A	305	316	Right-handed alpha
Helix 17	AB8	A	323	331	Right-handed alpha
Helix 18	AB9	A	345	350	Right-handed alpha
Helix 19	AC1	A	353	355	Right-handed 310
Helix 20	AC2	A	356	370	Right-handed alpha
Helix 21	AC3	A	373	377	Right-handed 310
Helix 22	AC4	B	14	23	Right-handed alpha
Helix 23	AC5	B	74	81	Right-handed 310
Helix 24	AC6	B	104	108	Right-handed 310
Helix 25	AC7	C	27	44	Right-handed alpha
Helix 26	AC8	C	46	50	Right-handed 310
Helix 27	AC9	C	66	76	Right-handed alpha
Helix 28	AD1	C	87	89	Right-handed 310
Helix 29	AD2	C	90	105	Right-handed alpha
Helix 30	AD3	C	147	153	Right-handed alpha
Helix 31	AD4	C	154	157	Right-handed 310
Helix 32	AD5	C	161	177	Right-handed alpha
Helix 33	AD6	C	179	195	Right-handed alpha
Helix 34	AD7	C	208	215	Right-handed alpha
Helix 35	AD8	C	225	227	Right-handed 310
Helix 36	AD9	C	242	246	Right-handed alpha
Helix 37	AE1	C	266	270	Right-handed 310
Helix 38	AE2	C	277	290	Right-handed alpha
Helix 39	AE3	C	292	296	Right-handed 310
Helix 40	AE4	C	305	316	Right-handed alpha
Helix 41	AE5	C	323	330	Right-handed alpha
Helix 42	AE6	C	345	351	Right-handed alpha
Helix 43	AE7	C	356	370	Right-handed alpha
Helix 44	AE8	C	373	377	Right-handed 310
Helix 45	AE9	D	14	23	Right-handed alpha
Helix 46	AF1	D	74	81	Right-handed 310
Helix 47	AF2	D	104	108	Right-handed 310

There are 11 sheets in PDB entry 9MYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	85	first strand
Strand 2	A	52	56	parallel
Strand 3	A	110	116	parallel
Strand 4	A	234	241	anti-parallel
Strand 5	A	7	14	anti-parallel
Strand 6	A	253	262	anti-parallel
Strand 7	A	395	403	anti-parallel
Strand 8	A	383	390	anti-parallel
Strand 9	A	299	300	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	219	first strand
Strand 2	A	222	223	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	37	first strand
Strand 2	B	26	31	anti-parallel
Strand 3	B	52	57	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	99	first strand
Strand 2	B	83	90	anti-parallel
Strand 3	B	61	69	anti-parallel
Strand 4	B	113	119	anti-parallel
Strand 5	B	127	132	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	95	99	first strand
Strand 2	B	83	90	anti-parallel
Strand 3	B	61	69	anti-parallel
Strand 4	B	113	119	anti-parallel
Strand 5	B	140	141	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	82	85	first strand
Strand 2	C	52	56	parallel
Strand 3	C	110	116	parallel
Strand 4	C	234	241	anti-parallel
Strand 5	C	7	14	anti-parallel
Strand 6	C	253	262	anti-parallel
Strand 7	C	395	403	anti-parallel
Strand 8	C	383	390	anti-parallel
Strand 9	C	298	300	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	219	first strand
Strand 2	C	222	223	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	231	first strand
Strand 2	C	352	353	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	37	first strand
Strand 2	D	26	31	anti-parallel
Strand 3	D	52	57	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	99	first strand
Strand 2	D	83	90	anti-parallel
Strand 3	D	61	69	anti-parallel
Strand 4	D	113	119	anti-parallel
Strand 5	D	127	132	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	95	99	first strand
Strand 2	D	83	90	anti-parallel
Strand 3	D	61	69	anti-parallel
Strand 4	D	113	119	anti-parallel
Strand 5	D	140	141	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MYR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MYR