Analysis of interatomic Contacts of Structural Units in PDB entry:
9MYS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MYS entry

There are 12 chains in PDB entry 9MYS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 613	ALA 1600
N	THR 10	THR 120
O	LYS 28	ALA 121
P	LYS 36	ALA 135
Q	VAL 21	GLY 102
X	A 16	A 164
Y	T 16	T 164
n	THR 10	LYS 124
o	LYS 25	LYS 122
p	VAL 35	ARG 134
q	ARG 19	ARG 19
q	VAL 21	GLY 102

There are 68 helices in PDB entry 9MYS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	624	636	Right-handed alpha
Helix 2	AA2	A	640	645	Right-handed alpha
Helix 3	AA3	A	656	661	Right-handed alpha
Helix 4	AA4	A	667	672	Right-handed alpha
Helix 5	AA5	A	673	677	Right-handed 310
Helix 6	AA6	A	805	809	Right-handed 310
Helix 7	AA7	A	826	828	Right-handed 310
Helix 8	AA8	A	842	846	Right-handed 310
Helix 9	AA9	A	850	855	Right-handed alpha
Helix 10	AB1	A	893	906	Right-handed alpha
Helix 11	AB2	A	971	975	Right-handed 310
Helix 12	AB3	A	1023	1027	Right-handed 310
Helix 13	AB4	A	1030	1037	Right-handed alpha
Helix 14	AB5	A	1054	1056	Right-handed 310
Helix 15	AB6	A	1071	1079	Right-handed alpha
Helix 16	AB7	A	1149	1158	Right-handed alpha
Helix 17	AB8	A	1170	1181	Right-handed alpha
Helix 18	AB9	A	1190	1201	Right-handed alpha
Helix 19	AC1	A	1236	1245	Right-handed alpha
Helix 20	AC2	A	1246	1259	Right-handed alpha
Helix 21	AC3	A	1270	1276	Right-handed 310
Helix 22	AC4	A	1277	1291	Right-handed alpha
Helix 23	AC5	A	1302	1305	Right-handed 310
Helix 24	AC6	A	1335	1339	Right-handed 310
Helix 25	AC7	A	1366	1372	Right-handed alpha
Helix 26	AC8	A	1394	1402	Right-handed alpha
Helix 27	AC9	A	1418	1427	Right-handed alpha
Helix 28	AD1	A	1435	1439	Right-handed 310
Helix 29	AD2	A	1476	1480	Right-handed 310
Helix 30	AD3	A	1498	1504	Right-handed alpha
Helix 31	AD4	A	1505	1511	Right-handed 310
Helix 32	AD5	A	1549	1557	Right-handed alpha
Helix 33	AD6	A	1568	1579	Right-handed alpha
Helix 34	AD7	A	1581	1600	Right-handed alpha
Helix 35	AD8	N	16	21	Right-handed alpha
Helix 36	AD9	N	26	37	Right-handed alpha
Helix 37	AE1	N	45	74	Right-handed alpha
Helix 38	AE2	N	79	90	Right-handed alpha
Helix 39	AE3	N	91	97	Right-handed alpha
Helix 40	AE4	N	112	116	Right-handed 310
Helix 41	AE5	O	34	46	Right-handed alpha
Helix 42	AE6	O	52	81	Right-handed alpha
Helix 43	AE7	O	87	99	Right-handed alpha
Helix 44	AE8	O	101	121	Right-handed alpha
Helix 45	AE9	P	44	57	Right-handed alpha
Helix 46	AF1	P	63	79	Right-handed alpha
Helix 47	AF2	P	85	114	Right-handed alpha
Helix 48	AF3	P	120	131	Right-handed alpha
Helix 49	AF4	Q	22	29	Right-handed 310
Helix 50	AF5	Q	30	42	Right-handed alpha
Helix 51	AF6	Q	49	76	Right-handed alpha
Helix 52	AF7	Q	82	94	Right-handed alpha
Helix 53	AF8	n	16	21	Right-handed alpha
Helix 54	AF9	n	26	37	Right-handed alpha
Helix 55	AG1	n	46	74	Right-handed alpha
Helix 56	AG2	n	79	90	Right-handed alpha
Helix 57	AG3	n	91	97	Right-handed alpha
Helix 58	AG4	o	34	46	Right-handed alpha
Helix 59	AG5	o	52	81	Right-handed alpha
Helix 60	AG6	o	87	99	Right-handed alpha
Helix 61	AG7	o	102	120	Right-handed alpha
Helix 62	AG8	p	44	55	Right-handed alpha
Helix 63	AG9	p	63	79	Right-handed alpha
Helix 64	AH1	p	85	114	Right-handed alpha
Helix 65	AH2	p	120	131	Right-handed alpha
Helix 66	AH3	q	30	42	Right-handed alpha
Helix 67	AH4	q	49	76	Right-handed alpha
Helix 68	AH5	q	82	94	Right-handed alpha

There are 17 sheets in PDB entry 9MYS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	751	752	first strand
Strand 2	A	756	757	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	814	824	first strand
Strand 2	A	790	799	anti-parallel
Strand 3	A	775	784	anti-parallel
Strand 4	A	762	765	anti-parallel
Strand 5	A	830	832	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	834	836	first strand
Strand 2	A	863	865	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	868	870	first strand
Strand 2	A	875	877	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	909	916	first strand
Strand 2	A	920	928	anti-parallel
Strand 3	A	992	1002	anti-parallel
Strand 4	A	931	934	first strand

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	909	916	first strand
Strand 2	A	920	928	anti-parallel
Strand 3	A	1015	1022	first strand
Strand 4	A	1041	1052	anti-parallel
Strand 5	A	1082	1088	parallel
Strand 6	A	1058	1064	parallel
Strand 7	A	938	941	anti-parallel
Strand 8	A	992	1002	anti-parallel
Strand 9	A	931	934	first strand

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1185	1187	first strand
Strand 2	A	1161	1167	parallel
Strand 3	A	1139	1144	parallel
Strand 4	A	1219	1222	parallel
Strand 5	A	1262	1268	parallel
Strand 6	A	1311	1318	anti-parallel
Strand 7	A	1293	1300	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1343	1345	first strand
Strand 2	A	1348	1350	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1385	1387	first strand
Strand 2	A	1408	1410	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1444	1445	first strand
Strand 2	A	1451	1452	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	42	43	first strand
Strand 2	O	85	86	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	77	78	first strand
Strand 2	O	50	51	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	100	101	first strand
Strand 2	q	96	97	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	83	84	first strand
Strand 2	Q	80	81	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	42	43	first strand
Strand 2	o	85	86	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	77	78	first strand
Strand 2	o	50	51	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	83	84	first strand
Strand 2	q	80	81	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MYS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MYS