Analysis of interatomic Contacts of Structural Units in PDB entry:
9MYT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MYT entry

There are 4 chains in PDB entry 9MYT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 27	ILE 172
B	SER 181	GLN 524
C	PHE 30	ILE 172
D	GLY 182	GLN 524

There are 14 helices in PDB entry 9MYT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	36	Right-handed 310
Helix 2	AA2	A	40	45	Right-handed 310
Helix 3	AA3	A	94	97	Right-handed 310
Helix 4	AA4	A	118	123	Right-handed alpha
Helix 5	AA5	B	286	290	Right-handed 310
Helix 6	AA6	B	389	393	Right-handed 310
Helix 7	AA7	B	455	461	Right-handed 310
Helix 8	AA8	C	32	36	Right-handed 310
Helix 9	AA9	C	40	45	Right-handed 310
Helix 10	AB1	C	94	97	Right-handed 310
Helix 11	AB2	C	118	124	Right-handed alpha
Helix 12	AB3	D	286	290	Right-handed 310
Helix 13	AB4	D	389	393	Right-handed 310
Helix 14	AB5	D	455	461	Right-handed 310

There are 14 sheets in PDB entry 9MYT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	38	first strand
Strand 2	A	132	136	parallel
Strand 3	A	139	143	anti-parallel
Strand 4	A	149	152	anti-parallel
Strand 5	A	158	161	anti-parallel
Strand 6	A	167	169	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	68	72	anti-parallel
Strand 3	A	76	81	anti-parallel
Strand 4	A	98	105	anti-parallel
Strand 5	A	92	93	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	68	72	anti-parallel
Strand 3	A	76	81	anti-parallel
Strand 4	A	98	105	anti-parallel
Strand 5	A	109	114	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	194	first strand
Strand 2	B	513	521	anti-parallel
Strand 3	B	498	505	anti-parallel
Strand 4	B	484	489	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	214	first strand
Strand 2	B	220	230	anti-parallel
Strand 3	B	244	255	anti-parallel
Strand 4	B	261	266	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	323	327	first strand
Strand 2	B	307	314	anti-parallel
Strand 3	B	293	301	anti-parallel
Strand 4	B	352	357	parallel
Strand 5	B	363	368	anti-parallel
Strand 6	B	377	381	anti-parallel
Strand 7	B	394	397	anti-parallel
Strand 8	B	400	401	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	424	first strand
Strand 2	B	427	434	anti-parallel
Strand 3	B	445	450	anti-parallel
Strand 4	B	466	471	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	38	first strand
Strand 2	C	132	136	parallel
Strand 3	C	139	143	anti-parallel
Strand 4	C	149	152	anti-parallel
Strand 5	C	158	162	anti-parallel
Strand 6	C	165	169	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	68	72	anti-parallel
Strand 3	C	76	81	anti-parallel
Strand 4	C	98	105	anti-parallel
Strand 5	C	92	93	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	68	72	anti-parallel
Strand 3	C	76	81	anti-parallel
Strand 4	C	98	105	anti-parallel
Strand 5	C	109	114	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	194	first strand
Strand 2	D	513	521	anti-parallel
Strand 3	D	498	505	anti-parallel
Strand 4	D	484	489	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	214	first strand
Strand 2	D	220	230	anti-parallel
Strand 3	D	244	255	anti-parallel
Strand 4	D	261	266	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	323	327	first strand
Strand 2	D	307	314	anti-parallel
Strand 3	D	293	301	anti-parallel
Strand 4	D	352	357	parallel
Strand 5	D	363	368	anti-parallel
Strand 6	D	377	381	anti-parallel
Strand 7	D	394	397	anti-parallel
Strand 8	D	400	401	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	416	424	first strand
Strand 2	D	427	434	anti-parallel
Strand 3	D	445	450	anti-parallel
Strand 4	D	466	471	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MYT

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MYT