Analysis of interatomic Contacts of Structural Units in PDB entry:
9MZ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MZ5 entry

There are 4 chains in PDB entry 9MZ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 2	PRO 325
C	PRO 7	VAL 150
A	VAL 2	HIS 334
D	SER 6	VAL 150

There are 14 helices in PDB entry 9MZ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	92	96	Right-handed 310
Helix 2	AA2	B	137	141	Right-handed 310
Helix 3	AA3	B	188	192	Right-handed 310
Helix 4	AA4	B	194	198	Right-handed 310
Helix 5	AA5	B	260	267	Right-handed 310
Helix 6	AA6	C	11	15	Right-handed 310
Helix 7	AA7	C	19	22	Right-handed 310
Helix 8	AA8	A	92	96	Right-handed 310
Helix 9	AA9	A	137	141	Right-handed 310
Helix 10	AB1	A	188	192	Right-handed 310
Helix 11	AB2	A	194	198	Right-handed 310
Helix 12	AB3	A	260	267	Right-handed 310
Helix 13	AB4	D	11	15	Right-handed 310
Helix 14	AB5	D	19	22	Right-handed 310

There are 12 sheets in PDB entry 9MZ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	11	first strand
Strand 2	B	316	323	anti-parallel
Strand 3	B	301	308	anti-parallel
Strand 4	B	287	292	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	31	first strand
Strand 2	B	39	47	anti-parallel
Strand 3	B	57	67	anti-parallel
Strand 4	B	73	75	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	133	first strand
Strand 2	B	113	120	anti-parallel
Strand 3	B	99	107	anti-parallel
Strand 4	B	158	163	parallel
Strand 5	B	169	174	anti-parallel
Strand 6	B	183	187	anti-parallel
Strand 7	B	199	200	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	232	first strand
Strand 2	B	235	242	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	270	274	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	17	first strand
Strand 2	C	110	114	parallel
Strand 3	C	117	121	anti-parallel
Strand 4	C	127	130	anti-parallel
Strand 5	C	136	139	anti-parallel
Strand 6	C	145	147	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	27	first strand
Strand 2	C	36	42	anti-parallel
Strand 3	C	48	52	anti-parallel
Strand 4	C	56	61	anti-parallel
Strand 5	C	80	84	anti-parallel
Strand 6	C	90	92	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	11	first strand
Strand 2	A	316	323	anti-parallel
Strand 3	A	301	308	anti-parallel
Strand 4	A	287	292	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	31	first strand
Strand 2	A	39	47	anti-parallel
Strand 3	A	57	67	anti-parallel
Strand 4	A	73	75	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	133	first strand
Strand 2	A	113	120	anti-parallel
Strand 3	A	99	107	anti-parallel
Strand 4	A	158	163	parallel
Strand 5	A	169	174	anti-parallel
Strand 6	A	183	187	anti-parallel
Strand 7	A	199	200	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	232	first strand
Strand 2	A	235	242	anti-parallel
Strand 3	A	249	254	anti-parallel
Strand 4	A	270	275	anti-parallel
Strand 5	A	283	284	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	16	17	first strand
Strand 2	D	110	114	parallel
Strand 3	D	117	121	anti-parallel
Strand 4	D	127	130	anti-parallel
Strand 5	D	136	139	anti-parallel
Strand 6	D	145	147	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	27	first strand
Strand 2	D	36	42	anti-parallel
Strand 3	D	48	52	anti-parallel
Strand 4	D	56	61	anti-parallel
Strand 5	D	80	84	anti-parallel
Strand 6	D	90	92	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MZ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MZ5