Analysis of interatomic Contacts of Structural Units in PDB entry:
9MZN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MZN entry

There are 4 chains in PDB entry 9MZN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 33	ARG 431
B	THR 33	SER 416
C	THR 33	ARG 431
D	THR 33	GLU 415

There are 52 helices in PDB entry 9MZN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	51	67	Right-handed alpha
Helix 2	AA2	A	87	101	Right-handed alpha
Helix 3	AA3	A	111	126	Right-handed alpha
Helix 4	AA4	A	152	168	Right-handed alpha
Helix 5	AA5	A	180	185	Right-handed alpha
Helix 6	AA6	A	185	190	Right-handed alpha
Helix 7	AA7	A	211	221	Right-handed alpha
Helix 8	AA8	A	231	245	Right-handed alpha
Helix 9	AA9	A	260	264	Right-handed 310
Helix 10	AB1	A	266	273	Right-handed 310
Helix 11	AB2	A	286	300	Right-handed alpha
Helix 12	AB3	A	317	337	Right-handed alpha
Helix 13	AB4	A	356	365	Right-handed alpha
Helix 14	AB5	A	425	429	Right-handed 310
Helix 15	AB6	B	51	67	Right-handed alpha
Helix 16	AB7	B	88	101	Right-handed alpha
Helix 17	AB8	B	111	126	Right-handed alpha
Helix 18	AB9	B	152	168	Right-handed alpha
Helix 19	AC1	B	180	185	Right-handed alpha
Helix 20	AC2	B	185	191	Right-handed alpha
Helix 21	AC3	B	211	222	Right-handed alpha
Helix 22	AC4	B	231	245	Right-handed alpha
Helix 23	AC5	B	260	264	Right-handed 310
Helix 24	AC6	B	286	300	Right-handed alpha
Helix 25	AC7	B	317	337	Right-handed alpha
Helix 26	AC8	B	355	364	Right-handed alpha
Helix 27	AC9	C	51	67	Right-handed alpha
Helix 28	AD1	C	87	101	Right-handed alpha
Helix 29	AD2	C	111	126	Right-handed alpha
Helix 30	AD3	C	152	168	Right-handed alpha
Helix 31	AD4	C	179	185	Right-handed alpha
Helix 32	AD5	C	185	190	Right-handed alpha
Helix 33	AD6	C	211	221	Right-handed alpha
Helix 34	AD7	C	231	245	Right-handed alpha
Helix 35	AD8	C	266	271	Right-handed alpha
Helix 36	AD9	C	286	299	Right-handed alpha
Helix 37	AE1	C	317	337	Right-handed alpha
Helix 38	AE2	C	356	365	Right-handed alpha
Helix 39	AE3	D	51	67	Right-handed alpha
Helix 40	AE4	D	87	101	Right-handed alpha
Helix 41	AE5	D	111	126	Right-handed alpha
Helix 42	AE6	D	152	167	Right-handed alpha
Helix 43	AE7	D	179	185	Right-handed alpha
Helix 44	AE8	D	185	190	Right-handed alpha
Helix 45	AE9	D	191	194	Right-handed 310
Helix 46	AF1	D	211	221	Right-handed alpha
Helix 47	AF2	D	231	246	Right-handed alpha
Helix 48	AF3	D	260	264	Right-handed 310
Helix 49	AF4	D	266	271	Right-handed alpha
Helix 50	AF5	D	286	300	Right-handed alpha
Helix 51	AF6	D	317	336	Right-handed alpha
Helix 52	AF7	D	355	364	Right-handed alpha

There are 13 sheets in PDB entry 9MZN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	83	first strand
Strand 2	A	35	43	parallel
Strand 3	A	105	107	parallel
Strand 4	A	129	131	parallel
Strand 5	A	146	148	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	172	first strand
Strand 2	A	198	199	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	175	176	parallel
Strand 3	A	225	229	parallel
Strand 4	A	253	256	parallel
Strand 5	A	275	279	parallel
Strand 6	A	391	394	anti-parallel
Strand 7	A	399	401	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	370	first strand
Strand 2	A	373	375	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	406	first strand
Strand 2	A	410	411	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	83	first strand
Strand 2	B	35	43	parallel
Strand 3	B	106	107	parallel
Strand 4	B	129	131	parallel
Strand 5	B	146	148	parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	203	first strand
Strand 2	B	173	176	parallel
Strand 3	B	225	228	parallel
Strand 4	B	253	256	parallel
Strand 5	B	275	280	parallel
Strand 6	B	389	395	anti-parallel
Strand 7	B	398	406	anti-parallel
Strand 8	B	410	413	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	369	370	first strand
Strand 2	B	373	374	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	83	first strand
Strand 2	C	37	43	parallel
Strand 3	C	106	107	parallel
Strand 4	C	129	131	parallel
Strand 5	C	146	148	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	202	203	first strand
Strand 2	C	172	176	parallel
Strand 3	C	225	229	parallel
Strand 4	C	253	256	parallel
Strand 5	C	277	280	parallel
Strand 6	C	389	393	anti-parallel
Strand 7	C	400	405	anti-parallel
Strand 8	C	412	413	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	83	first strand
Strand 2	D	34	43	parallel
Strand 3	D	106	107	parallel
Strand 4	D	129	131	parallel
Strand 5	D	146	148	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	202	203	first strand
Strand 2	D	173	176	parallel
Strand 3	D	225	229	parallel
Strand 4	D	253	256	parallel
Strand 5	D	275	280	parallel
Strand 6	D	389	395	anti-parallel
Strand 7	D	398	405	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	369	370	first strand
Strand 2	D	373	374	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MZN

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MZN