Analysis of interatomic Contacts of Structural Units in PDB entry:
9MZU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MZU entry

There are 6 chains in PDB entry 9MZU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 32	PHE 476
B	THR 47	TRP 299
C	GLY 32	PHE 476
D	THR 47	TRP 299
E	GLY 32	PHE 476
F	THR 47	TRP 299

There are 69 helices in PDB entry 9MZU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	92	113	Right-handed alpha
Helix 2	AA2	A	120	122	Right-handed 310
Helix 3	AA3	A	151	160	Right-handed alpha
Helix 4	AA4	A	186	191	Right-handed alpha
Helix 5	AA5	A	192	196	Right-handed 310
Helix 6	AA6	A	198	203	Right-handed 310
Helix 7	AA7	A	242	245	Right-handed 310
Helix 8	AA8	A	259	265	Right-handed alpha
Helix 9	AA9	A	270	277	Right-handed alpha
Helix 10	AB1	A	280	284	Right-handed 310
Helix 11	AB2	A	292	310	Right-handed alpha
Helix 12	AB3	A	326	335	Right-handed alpha
Helix 13	AB4	A	368	372	Right-handed 310
Helix 14	AB5	A	428	431	Right-handed 310
Helix 15	AB6	B	49	59	Right-handed alpha
Helix 16	AB7	B	83	87	Right-handed 310
Helix 17	AB8	B	98	109	Right-handed alpha
Helix 18	AB9	B	132	137	Right-handed alpha
Helix 19	AC1	B	214	222	Right-handed alpha
Helix 20	AC2	B	239	245	Right-handed alpha
Helix 21	AC3	B	262	266	Right-handed 310
Helix 22	AC4	B	269	291	Right-handed alpha
Helix 23	AC5	C	92	113	Right-handed alpha
Helix 24	AC6	C	120	122	Right-handed 310
Helix 25	AC7	C	151	160	Right-handed alpha
Helix 26	AC8	C	186	192	Right-handed alpha
Helix 27	AC9	C	193	196	Right-handed 310
Helix 28	AD1	C	198	202	Right-handed 310
Helix 29	AD2	C	242	245	Right-handed 310
Helix 30	AD3	C	259	265	Right-handed alpha
Helix 31	AD4	C	270	277	Right-handed alpha
Helix 32	AD5	C	280	284	Right-handed 310
Helix 33	AD6	C	292	310	Right-handed alpha
Helix 34	AD7	C	326	335	Right-handed alpha
Helix 35	AD8	C	368	372	Right-handed 310
Helix 36	AD9	C	407	412	Right-handed alpha
Helix 37	AE1	C	428	431	Right-handed 310
Helix 38	AE2	D	49	59	Right-handed alpha
Helix 39	AE3	D	83	87	Right-handed 310
Helix 40	AE4	D	98	109	Right-handed alpha
Helix 41	AE5	D	125	129	Right-handed 310
Helix 42	AE6	D	132	137	Right-handed alpha
Helix 43	AE7	D	214	222	Right-handed alpha
Helix 44	AE8	D	239	245	Right-handed alpha
Helix 45	AE9	D	262	266	Right-handed 310
Helix 46	AF1	D	269	292	Right-handed alpha
Helix 47	AF2	E	92	113	Right-handed alpha
Helix 48	AF3	E	120	122	Right-handed 310
Helix 49	AF4	E	151	160	Right-handed alpha
Helix 50	AF5	E	175	177	Right-handed 310
Helix 51	AF6	E	186	191	Right-handed alpha
Helix 52	AF7	E	192	196	Right-handed 310
Helix 53	AF8	E	198	203	Right-handed 310
Helix 54	AF9	E	242	245	Right-handed 310
Helix 55	AG1	E	259	265	Right-handed alpha
Helix 56	AG2	E	270	277	Right-handed alpha
Helix 57	AG3	E	280	284	Right-handed 310
Helix 58	AG4	E	292	310	Right-handed alpha
Helix 59	AG5	E	326	335	Right-handed alpha
Helix 60	AG6	E	368	372	Right-handed 310
Helix 61	AG7	E	428	431	Right-handed 310
Helix 62	AG8	F	49	59	Right-handed alpha
Helix 63	AG9	F	83	87	Right-handed 310
Helix 64	AH1	F	98	109	Right-handed alpha
Helix 65	AH2	F	132	137	Right-handed alpha
Helix 66	AH3	F	214	222	Right-handed alpha
Helix 67	AH4	F	239	245	Right-handed alpha
Helix 68	AH5	F	262	267	Right-handed 310
Helix 69	AH6	F	269	291	Right-handed alpha

There are 31 sheets in PDB entry 9MZU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	54	first strand
Strand 2	A	84	87	anti-parallel
Strand 3	A	470	472	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	62	first strand
Strand 2	A	76	81	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	127	first strand
Strand 2	A	133	138	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	164	first strand
Strand 2	A	171	173	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	185	first strand
Strand 2	A	247	253	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	225	first strand
Strand 2	A	231	239	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	457	first strand
Strand 2	A	433	437	anti-parallel
Strand 3	A	397	403	anti-parallel
Strand 4	A	465	466	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	116	first strand
Strand 2	B	210	213	anti-parallel
Strand 3	B	184	195	anti-parallel
Strand 4	B	207	208	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	116	first strand
Strand 2	B	210	213	anti-parallel
Strand 3	B	184	195	anti-parallel
Strand 4	B	166	177	anti-parallel
Strand 5	B	69	77	anti-parallel
Strand 6	B	250	255	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	225	226	first strand
Strand 2	B	237	238	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	54	first strand
Strand 2	C	84	87	anti-parallel
Strand 3	C	470	472	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	57	62	first strand
Strand 2	C	76	81	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	124	127	first strand
Strand 2	C	133	138	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	164	first strand
Strand 2	C	171	173	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	185	first strand
Strand 2	C	247	253	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	225	first strand
Strand 2	C	231	239	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	457	first strand
Strand 2	C	433	437	anti-parallel
Strand 3	C	397	403	anti-parallel
Strand 4	C	465	466	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	116	first strand
Strand 2	D	210	213	anti-parallel
Strand 3	D	184	195	anti-parallel
Strand 4	D	207	208	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	115	116	first strand
Strand 2	D	210	213	anti-parallel
Strand 3	D	184	195	anti-parallel
Strand 4	D	166	177	anti-parallel
Strand 5	D	69	77	anti-parallel
Strand 6	D	250	255	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	145	first strand
Strand 2	D	154	155	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	225	226	first strand
Strand 2	D	237	238	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	51	54	first strand
Strand 2	E	84	87	anti-parallel
Strand 3	E	470	472	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	57	62	first strand
Strand 2	E	76	81	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	124	127	first strand
Strand 2	E	133	138	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	162	164	first strand
Strand 2	E	171	173	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	179	185	first strand
Strand 2	E	247	253	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	217	225	first strand
Strand 2	E	231	239	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	453	457	first strand
Strand 2	E	433	437	anti-parallel
Strand 3	E	397	403	anti-parallel
Strand 4	E	465	466	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	116	first strand
Strand 2	F	210	213	anti-parallel
Strand 3	F	184	195	anti-parallel
Strand 4	F	207	208	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	116	first strand
Strand 2	F	210	213	anti-parallel
Strand 3	F	184	195	anti-parallel
Strand 4	F	166	177	anti-parallel
Strand 5	F	69	77	anti-parallel
Strand 6	F	250	255	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	225	226	first strand
Strand 2	F	237	238	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MZU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MZU